fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G38960.1 IDDEMIDLNANPQRVHE at 138/183 in AT4G38960.1
IDDEMIDLNANPQRVHE at 105/150 in AT4G38960.2
IDDEMIDLNANPQRVHE at 181/226 in AT4G38960.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt022229 MDNNLIDLNARPQRIHG in 166/203 AT4G38960.1 1st_1st 0.676012461 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G38960.1     MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE
pt022229_POPTR_ MRTICDVCESAAAILFCAADEAALCRSCDEKVHLCNKLASRHVRVGLADPSAVPQCDICE
                ** :**.**.****:***********.******:**************:** .* *****

AT4G38960.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKP------------
pt022229_POPTR_ NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGRMEEQGQQPLD
                *********************:***********:******:*******            

AT4G38960.1     -----KENN------TRDNLQNQRVS----TNGNGEANGKIDDEMIDLNANPQRVHEPSS
pt022229_POPTR_ HNETRRDQNQPLKLTARENKQNHRASPVPMVENNTDSDGKMDNNLIDLNARPQRIH----
                     :::*      :*:* **:*.*    .:.* :::**:*:::*****.***:*    

AT4G38960.1     NNNGIDVNNENNHEPAGLVPVGPFKRESEK
pt022229_POPTR_ ---GQNSTNQENHESSSAVPVGSFKREPQK
                   * : .*::***.:. ****.****.:*
BoxShade v3.31 C (beta, 970507) Output
AT4G38960.1     M R I L C D A C E N A A A I I F C A A D E A A L C R P C D E K V H M C N K L A S R H V R V G L A E P S N A P C C D I C E
pt022229_POPTR_    M R T I C D V C E S A A A I L F C A A D E A A L C R S C D E K V H L C N K L A S R H V R V G L A D P S A V P Q C D I C E
 
AT4G38960.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H G R F L L L R Q R I E F P G D K P - - - - - - - - - - - -
pt022229_POPTR_    N A P A F F Y C E I D G S S L C L Q C D M I V H V G G K R T H G R Y L L L R Q R V E F P G D K P G R M E E Q G Q Q P L D
 
AT4G38960.1     - - - - - K E N N - - - - - - T R D N L Q N Q R V S - - - - T N G N G E A N G K I D D E M I D L N A N P Q R V H E P S S
pt022229_POPTR_    H N E T R R D Q N Q P L K L T A R E N K Q N H R A S P V P M V E N N T D S D G K M D N N L I D L N A R P Q R I H - - - -
 
AT4G38960.1     N N N G I D V N N E N N H E P A G L V P V G P F K R E S E K
pt022229_POPTR_    - - - G Q N S T N Q E N H E S S S A V P V G S F K R E P Q K
 
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