fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G38960.1 IDDEMIDLNANPQRVHE at 138/183 in AT4G38960.1
IDDEMIDLNANPQRVHE at 105/150 in AT4G38960.2
IDDEMIDLNANPQRVHE at 181/226 in AT4G38960.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb006271 IDSKMIDLNMRPVRTHG in 166/211 AT4G38960.1 1st_1st 0.591900311 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G38960.1     MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE
Sb006271_Sorbi1 MRTICDVCESAPAVLFCAADEAALCRSCDEKVHMCNKLASRHVRVGLADPNKLARCDICE
                ** :**.**.*.*::***********.*********************:*.: . *****

AT4G38960.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKPKENN--------
Sb006271_Sorbi1 NSPAFFYCEIDGTSLCLSCDMTVHVGGKRTHGRYLLLRQRVEFPGDKPGHMDDVPMETVP
                *:**********:****.***.***********:******:******* . :        

AT4G38960.1     --TRDNLQNQR------------------VSTNGNGEANGKIDDEMIDLNANPQRVHEPS
Sb006271_Sorbi1 METKDP-ENQRDQKKAPKEQMANHHNGDHPACDGNCDDQGNIDSKMIDLNMRPVRTHGQG
                  *:*  :***                   : :** : :*:**.:***** .* *.*  .

AT4G38960.1     SNN--NGIDVNNENNHEPAGLVPVGPFKRESEK
Sb006271_Sorbi1 SNSQTQGVDL-SVNNHDSPGVVPTSNSERDASK
                **.  :*:*: . ***:..*:**..  :*::.*
BoxShade v3.31 C (beta, 970507) Output
AT4G38960.1     M R I L C D A C E N A A A I I F C A A D E A A L C R P C D E K V H M C N K L A S R H V R V G L A E P S N A P C C D I C E
Sb006271_Sorbi1    M R T I C D V C E S A P A V L F C A A D E A A L C R S C D E K V H M C N K L A S R H V R V G L A D P N K L A R C D I C E
 
AT4G38960.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H G R F L L L R Q R I E F P G D K P K E N N - - - - - - - -
Sb006271_Sorbi1    N S P A F F Y C E I D G T S L C L S C D M T V H V G G K R T H G R Y L L L R Q R V E F P G D K P G H M D D V P M E T V P
 
AT4G38960.1     - - T R D N L Q N Q R - - - - - - - - - - - - - - - - - - V S T N G N G E A N G K I D D E M I D L N A N P Q R V H E P S
Sb006271_Sorbi1    M E T K D P - E N Q R D Q K K A P K E Q M A N H H N G D H P A C D G N C D D Q G N I D S K M I D L N M R P V R T H G Q G
 
AT4G38960.1     S N N - - N G I D V N N E N N H E P A G L V P V G P F K R E S E K
Sb006271_Sorbi1    S N S Q T Q G V D L - S V N N H D S P G V V P T S N S E R D A S K
 
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