fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G38960.1 IDDEMIDLNANPQRVHE at 138/183 in AT4G38960.1
IDDEMIDLNANPQRVHE at 105/150 in AT4G38960.2
IDDEMIDLNANPQRVHE at 181/226 in AT4G38960.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm030569 MDKKLIDLNTRPLRLNG in 166/212 AT4G38960.1 1st_1st 0.626168224 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G38960.1     MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE
gm030569_Glyma1 MRTLCDVCESAAAILFCAADEAALCSACDHKIHMCNKLASRHVRVGLADPTDVPRCDICE
                ** ***.**.****:********** .**.*:****************:*::.* *****

AT4G38960.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKPKEN---------
gm030569_Glyma1 NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRAQFPGDKPAQMEELELQPMD
                *********************:***********:****** :****** :          

AT4G38960.1     --------------NTRDNLQNQRVS----TNGNGEANGKIDDEMIDLNANPQRVHEPSS
gm030569_Glyma1 QNESRRDESQSLKLKTRDSQQNHSVSPFPRQENNIDGHGKMDKKLIDLNTRPLRLNGSAP
                              :***. **: **     :.* :.:**:*.::****:.* *:: .:.

AT4G38960.1     NNNG--IDVNNENNHEPAGLVPVGPFKRESEK
gm030569_Glyma1 NNQEQCMDILRGNNHESASVPPVESFKQESEK
                **:   :*: . ****.*.: ** .**:****
BoxShade v3.31 C (beta, 970507) Output
AT4G38960.1     M R I L C D A C E N A A A I I F C A A D E A A L C R P C D E K V H M C N K L A S R H V R V G L A E P S N A P C C D I C E
gm030569_Glyma1    M R T L C D V C E S A A A I L F C A A D E A A L C S A C D H K I H M C N K L A S R H V R V G L A D P T D V P R C D I C E
 
AT4G38960.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H G R F L L L R Q R I E F P G D K P K E N - - - - - - - - -
gm030569_Glyma1    N A P A F F Y C E I D G S S L C L Q C D M I V H V G G K R T H G R Y L L L R Q R A Q F P G D K P A Q M E E L E L Q P M D
 
AT4G38960.1     - - - - - - - - - - - - - - N T R D N L Q N Q R V S - - - - T N G N G E A N G K I D D E M I D L N A N P Q R V H E P S S
gm030569_Glyma1    Q N E S R R D E S Q S L K L K T R D S Q Q N H S V S P F P R Q E N N I D G H G K M D K K L I D L N T R P L R L N G S A P
 
AT4G38960.1     N N N G - - I D V N N E N N H E P A G L V P V G P F K R E S E K
gm030569_Glyma1    N N Q E Q C M D I L R G N N H E S A S V P P V E S F K Q E S E K
 
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