fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G39250.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb008392 not found in 98aa AT2G21650.1 1st_not 0.537634408 II
Sb008471 not found in 87aa AT4G39250.1 not_1st 0.478494623 II
Sb019115 not found in 109aa AT4G39250.1 not_1st 0.478494623 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G39250.1     MASSSMSSQSS---GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHY
Sb008471_Sorbi1 MSGSRNSSRNVNIDSNWSKKENKLFEEALACYGEGTPDRWHKVARAMGGIKTADEVRRHY
Sb019115_Sorbi1 MSASRSSSPNSM--SKWSPKENKMFEQALAYYGEGTPNRWDKVSSAMGGIKSAEEVRCHY
Sb008392_Sorbi1 MATMSLSS-TR---AQWTAKQNKLFEQALAVYDRDTPDRWHNIARAVGGGKSADEVRRYY
                *:    ** .    ..*: *:** **:*** *...**:**.::: .: * *:::**: :*

AT4G39250.1     ELLVQDINSIENGHVPFPNYRTSGGCTNGRL------SQEEKRMRNMRLQ-
Sb008471_Sorbi1 EILNDDVTLIESGGVPFPNYNTQGAWN------------------------
Sb019115_Sorbi1 EDLDYDVKMIESGHVPYPQYKTQGFWTRGSLMPTNYVGSNPSIMTKISYFQ
Sb008392_Sorbi1 ELLVKDVEHIEAGKVPFPAYRCPAGYDADRI------DRSPA-LKHLKI--
                * *  *:  ** * **:* *.  .
BoxShade v3.31 C (beta, 970507) Output
AT4G39250.1     M A S S S M S S Q S S - - - G S W T A K Q N K A F E Q A L A T Y D Q D T P N R W Q N V A K V V - G G K T T E E V K R H Y
Sb008471_Sorbi1    M S G S R N S S R N V N I D S N W S K K E N K L F E E A L A C Y G E G T P D R W H K V A R A M G G I K T A D E V R R H Y
Sb019115_Sorbi1    M S A S R S S S P N S M - - S K W S P K E N K M F E Q A L A Y Y G E G T P N R W D K V S S A M G G I K S A E E V R C H Y
Sb008392_Sorbi1    M A T M S L S S - T R - - - A Q W T A K Q N K L F E Q A L A V Y D R D T P D R W H N I A R A V G G G K S A D E V R R Y Y
 
AT4G39250.1     E L L V Q D I N S I E N G H V P F P N Y R T S G G C T N G R L - - - - - - S Q E E K R M R N M R L Q -
Sb008471_Sorbi1    E I L N D D V T L I E S G G V P F P N Y N T Q G A W N - - - - - - - - - - - - - - - - - - - - - - - -
Sb019115_Sorbi1    E D L D Y D V K M I E S G H V P Y P Q Y K T Q G F W T R G S L M P T N Y V G S N P S I M T K I S Y F Q
Sb008392_Sorbi1    E L L V K D V E H I E A G K V P F P A Y R C P A G Y D A D R I - - - - - - D R S P A - L K H L K I - -
 
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