fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G39780.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm021250 not found in 312aa AT4G39780.1 1st_1st 0.416846652 Ia
Gm012800 not found in 312aa AT4G39780.1 not_1st 0.412526997 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G39780.1     -MAAIDMFNSNT------DPFQEELMKALQPYTTN------TDSSS----PT---YSNTV
gm021250_Glyma0 MGTAIDMYNSSNIVADFLDPYSEELMKALKPFMKSDYFSA-SSSSSLESQPCSF-SSNSL
gm012800_Glyma0 MGTAIGMYSNNNIVPDFLDPYSEELMKALMPFMKSDYFSASSSSSSRESHPSPLIPSNSL
                  :**.*:....      **:.******* *: ..      :.***    *     **::

AT4G39780.1     -FGFNQTTSLGLNQLTPYQIHQIQNQLN---QRRNII--SPNLAPKPVPMKN----MTAQ
gm021250_Glyma0 PTSYPSSNQIKLNQLTPDQIVQIQAQIHIQQQQQHVAQTQTHLGPKRVPMKHAGTAAKPT
gm012800_Glyma0 ----PSSNQIRLNQLTQDQILQIQAQIHI--QQQHVAQGQAHLGPKRVPMKHAGTAAKAA
                     .:..: *****  ** *** *::   *::::   ..:*.** ****:     .. 

AT4G39780.1     KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQ
gm021250_Glyma0 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPH
gm012800_Glyma0 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPH
                ***************************************:*** **:************:

AT4G39780.1     FRHEDGY-YGGGSCFNPLHSSVDAKLQEICQSLRKTEDIDLPCSETELFPP---------
gm021250_Glyma0 LRHHGAFVFGEFGDYKPLPSSVDSKLQAICESLAKQE--EKPCCSVEDVKPVIHAAELAE
gm012800_Glyma0 LRHHGAFVFGEFGDYRPLPSSVDSKLQAICESLAKQE--EKPCCSVEDVKPVIHAAELAE
                :**...: :*  . :.** ****:*** **:** * *  : **...* . *         

AT4G39780.1     --------KTEYQESEY-GFLRSDENSFSDES-HVESSSPESGITTFLDFSD-----SGF
gm021250_Glyma0 VESDVAKSNAEYVYPEFEDFKVEHENPMF----SGESSSPESSV-TFLDFSDFSDSNNQW
gm012800_Glyma0 VESDVAKLNAEYVYPEFEDFKVENENPMLSSSVSGESSSPESGV-TFLDFSDFSDSNNQW
                        ::**  .*: .*  ..**.:       *******.: *******     . :

AT4G39780.1     DEIGSFGLEKFPSVEIDWDAISKLSES
gm021250_Glyma0 DEMENFGLEKFPSVEIDWEAI------
gm012800_Glyma0 DEMENFGLEKFPSVEIDWAAI------
                **: .************* **
BoxShade v3.31 C (beta, 970507) Output
AT4G39780.1     - M A A I D M F N S N T - - - - - - D P F Q E E L M K A L Q P Y T T N - - - - - - T D S S S - - - - P T - - - Y S N T V
gm021250_Glyma0    M G T A I D M Y N S S N I V A D F L D P Y S E E L M K A L K P F M K S D Y F S A - S S S S S L E S Q P C S F - S S N S L
gm012800_Glyma0    M G T A I G M Y S N N N I V P D F L D P Y S E E L M K A L M P F M K S D Y F S A S S S S S S R E S H P S P L I P S N S L
 
AT4G39780.1     - F G F N Q T T S L G L N Q L T P Y Q I H Q I Q N Q L N - - - Q R R N I I - - S P N L A P K P V P M K N - - - - M T A Q
gm021250_Glyma0    P T S Y P S S N Q I K L N Q L T P D Q I V Q I Q A Q I H I Q Q Q Q Q H V A Q T Q T H L G P K R V P M K H A G T A A K P T
gm012800_Glyma0    - - - - P S S N Q I R L N Q L T Q D Q I L Q I Q A Q I H I - - Q Q Q H V A Q G Q A H L G P K R V P M K H A G T A A K A A
 
AT4G39780.1     K L Y R G V R Q R H W G K W V A E I R L P K N R T R L W L G T F D T A E E A A M A Y D L A A Y K L R G E F A R L N F P Q
gm021250_Glyma0    K L Y R G V R Q R H W G K W V A E I R L P K N R T R L W L G T F D T A E E A A L A Y D N A A F K L R G E F A R L N F P H
gm012800_Glyma0    K L Y R G V R Q R H W G K W V A E I R L P K N R T R L W L G T F D T A E E A A L A Y D N A A F K L R G E F A R L N F P H
 
AT4G39780.1     F R H E D G Y - Y G G G S C F N P L H S S V D A K L Q E I C Q S L R K T E D I D L P C S E T E L F P P - - - - - - - - -
gm021250_Glyma0    L R H H G A F V F G E F G D Y K P L P S S V D S K L Q A I C E S L A K Q E - - E K P C C S V E D V K P V I H A A E L A E
gm012800_Glyma0    L R H H G A F V F G E F G D Y R P L P S S V D S K L Q A I C E S L A K Q E - - E K P C C S V E D V K P V I H A A E L A E
 
AT4G39780.1     - - - - - - - - K T E Y Q E S E Y - G F L R S D E N S F S D E S - H V E S S S P E S G I T T F L D F S D - - - - - S G F
gm021250_Glyma0    V E S D V A K S N A E Y V Y P E F E D F K V E H E N P M F - - - - S G E S S S P E S S V - T F L D F S D F S D S N N Q W
gm012800_Glyma0    V E S D V A K L N A E Y V Y P E F E D F K V E N E N P M L S S S V S G E S S S P E S G V - T F L D F S D F S D S N N Q W
 
AT4G39780.1     D E I G S F G L E K F P S V E I D W D A I S K L S E S
gm021250_Glyma0    D E M E N F G L E K F P S V E I D W E A I - - - - - -
gm012800_Glyma0    D E M E N F G L E K F P S V E I D W A A I - - - - - -
 
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