fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G01200.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm049838 not found in 287aa AT2G38090.1 1st_not 0.505030181 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G01200.1     MSSSTMYRGVNMFSPA----NTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSK
gm049838_Glyma1 -----MNRGIEVLSPASYLQNSNWLFQESKEARWTAEENKLFENALAYY-DKDTPDRWMR
                     * **::::***    *:**:*** :** ******* **:****  ***. : * :

AT5G01200.1     IADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSAANSDYFFGLE-NSSYG
gm049838_Glyma1 VAAMIPGKTVGDVIKQYRELEEDVSVIEAGLIPVPGY-----TTASS---FTLEWVNNQG
                :* :******.****:*:***:*** *******:***     ::*.*   * **  .. *

AT5G01200.1     YDYV-----VGGKRSSPAMTDCFRSPMP-EKERKKGVPWTEDEHLRFLMGLKKYGKGDWR
gm049838_Glyma1 YDEFKQFCNVGAKRGA--------STRPTEQERKKGVPWTEEEHRQFLLGLKKYGKGDWR
                ** .     **.**.:        *. * *:**********:** :**:***********

AT5G01200.1     NIAKSFVTTRTPTQVASHAQKYFLRQLTDGKDKRRSSIHDITTVNIPDADASATATTA--
gm049838_Glyma1 NISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTKPS
                **::.******************:****.************* **: ::.:.:: **   

AT5G01200.1     ----DVALSPT---------PANSFDVFLQPNPHYSFASAS--ASSYYNAFPQ-------
gm049838_Glyma1 SPLQNQALSSMVKEEYEWKLPCEGMPIVFNSTSGNMFMSAPLHGISSYESRPQEQNLLRH
                    : ***.          *.:.: :.::...   * **.  . * *:: **       

AT5G01200.1     --WS-----
gm049838_Glyma1 SPWMPVFTL
                  *
BoxShade v3.31 C (beta, 970507) Output
AT5G01200.1     M S S S T M Y R G V N M F S P A - - - - N T N W I F Q E V R E A T W T A E E N K R F E K A L A Y L D D K D N L E S W S K
gm049838_Glyma1    - - - - - M N R G I E V L S P A S Y L Q N S N W L F Q E S K E A R W T A E E N K L F E N A L A Y Y - D K D T P D R W M R
 
AT5G01200.1     I A D L I P G K T V A D V I K R Y K E L E D D V S D I E A G L I P I P G Y G G D A S S A A N S D Y F F G L E - N S S Y G
gm049838_Glyma1    V A A M I P G K T V G D V I K Q Y R E L E E D V S V I E A G L I P V P G Y - - - - - T T A S S - - - F T L E W V N N Q G
 
AT5G01200.1     Y D Y V - - - - - V G G K R S S P A M T D C F R S P M P - E K E R K K G V P W T E D E H L R F L M G L K K Y G K G D W R
gm049838_Glyma1    Y D E F K Q F C N V G A K R G A - - - - - - - - S T R P T E Q E R K K G V P W T E E E H R Q F L L G L K K Y G K G D W R
 
AT5G01200.1     N I A K S F V T T R T P T Q V A S H A Q K Y F L R Q L T D G K D K R R S S I H D I T T V N I P D A D A S A T A T T A - -
gm049838_Glyma1    N I S R N F V T T R T P T Q V A S H A Q K Y F I R Q L T G G K D K R R S S I H D I T M V N L Q E T K S P S S D T T K P S
 
AT5G01200.1     - - - - D V A L S P T - - - - - - - - - P A N S F D V F L Q P N P H Y S F A S A S - - A S S Y Y N A F P Q - - - - - - -
gm049838_Glyma1    S P L Q N Q A L S S M V K E E Y E W K L P C E G M P I V F N S T S G N M F M S A P L H G I S S Y E S R P Q E Q N L L R H
 
AT5G01200.1     - - W S - - - - -
gm049838_Glyma1    S P W M P V F T L
 
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