fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G01860.1 KDSDIDLSLKL at 209/215 in AT5G01860.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt007210 not found in 270aa AT5G01860.1 1st_1st 0.233333333 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G01860.1     MELNLSTPTSCSSSSISSSSHEAIPRTKG-----------KTKEEVT--AEP--------
pt007210_POPTR_ METVGRERCPSEGSSISATS-EGTPHRDGSELDQTEMVNTNMKEKVVQGSEPALLPKSSA
                **       ....****::* *. *: .*           : **:*.  :**        

AT5G01860.1     --------SKENQQR---LEFRFL---------FNESS--TRNEAKARVFACTFCKKEFS
pt007210_POPTR_ RVLLDLKLSRDNSIRGSKLEFNLLSPMNVGSSHAKESTAETLKQTESRVFPCNFCKREFS
                        *::*. *   ***.:*          :**:  * :::::***.*.***:***

AT5G01860.1     TSQALGGHQNAHKQERSLAKRRKEIEINYPELSIYSQYPPSGLSFSS--SSSQYDLGVRY
pt007210_POPTR_ TSQALGGHQNAHKQERTLAKRRQEMDVG--ALVHLPYYPYSSLSTNPYYGSLNRSLGVRL
                ****************:*****:*:::.   *   . ** *.** ..  .* : .**** 

AT5G01860.1     NPNIAKTTKPYPF-NIFACRFGYRGG------LNFPPMSHLSVPKTDDLSI---------
pt007210_POPTR_ DSLIHKTSPPYPWTSPIGLRYDAHGGWSGQTTMNTQPSNGKSL-TTESLNAFSGGFGISS
                :. * **: ***: . :. *:. :**      :*  * .  *: .*:.*.          

AT5G01860.1     ---------NLISNLEGSIHDQAVKKDQPEADPCKDSDIDLSLKL
pt007210_POPTR_ SSSSSRFEDNLLRNFGSSPSSNTVAINKPPGYVY-----------
                         **: *: .*  .::*  ::* .
BoxShade v3.31 C (beta, 970507) Output
AT5G01860.1     M E L N L S T P T S C S S S S I S S S S H E A I P R T K G - - - - - - - - - - - K T K E E V T - - A E P - - - - - - - -
pt007210_POPTR_    M E T V G R E R C P S E G S S I S A T S - E G T P H R D G S E L D Q T E M V N T N M K E K V V Q G S E P A L L P K S S A
 
AT5G01860.1     - - - - - - - - S K E N Q Q R - - - L E F R F L - - - - - - - - - F N E S S - - T R N E A K A R V F A C T F C K K E F S
pt007210_POPTR_    R V L L D L K L S R D N S I R G S K L E F N L L S P M N V G S S H A K E S T A E T L K Q T E S R V F P C N F C K R E F S
 
AT5G01860.1     T S Q A L G G H Q N A H K Q E R S L A K R R K E I E I N Y P E L S I Y S Q Y P P S G L S F S S - - S S S Q Y D L G V R Y
pt007210_POPTR_    T S Q A L G G H Q N A H K Q E R T L A K R R Q E M D V G - - A L V H L P Y Y P Y S S L S T N P Y Y G S L N R S L G V R L
 
AT5G01860.1     N P N I A K T T K P Y P F - N I F A C R F G Y R G G - - - - - - L N F P P M S H L S V P K T D D L S I - - - - - - - - -
pt007210_POPTR_    D S L I H K T S P P Y P W T S P I G L R Y D A H G G W S G Q T T M N T Q P S N G K S L - T T E S L N A F S G G F G I S S
 
AT5G01860.1     - - - - - - - - - N L I S N L E G S I H D Q A V K K D Q P E A D P C K D S D I D L S L K L
pt007210_POPTR_    S S S S S R F E D N L L R N F G S S P S S N T V A I N K P P G Y V Y - - - - - - - - - - -
 
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