fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G04340.1 EDEYIALCLMLLARDG at 52/238 in AT5G04340.1
SGHRGFDLNIPPIPEFS at 201/238 in AT5G04340.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm014082 not found in 233aa AT1G27730.1 1st_not 0.456140350 II
Pt017464 not found in 238aa AT1G27730.1 1st_not 0.438596491 II
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G04340.1     MALETLTSPRLSSPMPTLFQDSALGFHGS---KGKRSKRSRSEFD--RQSLTEDEYIALC
pt017464_POPTR_ MALEALNSPTTAPPSFQ-FEDLSLPCAGEPWVKRKRSKRPRLDHQ---P--TEEEYLALC
gm014082_Glyma0 MALEALQSPTTATPSFSPFEETSLSYLETPWTKGKRSKRSRTEQQLQHPSCTEEEYLALC
                ****:* **  :.*    *:: :*        * *****.* : :      **:**:***

AT5G04340.1     LMLLARDGDRNRDLDLPSSS---SSPPLLPPLPTPIYKCSVCDKAFSSYQALGGHKASHR
pt017464_POPTR_ LVMLARGHQKSLTPSTVFTS---------SELKNS-YKCSVCNKEFPSYQALGGHKASHR
gm014082_Glyma0 LIMLARGGAGSVSTAKPAVSDNNSAP--LSAAKLS-YKCSVCNKAFSSYQALGGHKASHR
                *::***.   .        *         .    . ******:* *.*************

AT5G04340.1     KSFSLTQSAGGDELSTSSAIT-----TSGISGGGGGSVKSHVCSICHKSFATGQALGGHK
pt017464_POPTR_ KLAG-----GGEDQTTSSTTTSAITATKTVSNGSG---KTHECSICHKTFPTGQALGGHK
gm014082_Glyma0 KLA-------GENHPTSSAVT-----TSSASNGGG---RTHECSICHKTFSTGQALGGHK
                *         *:: .***: *     *.  *.*.*   ::* ******:*.*********

AT5G04340.1     RCHYEGKNGGG---VSSSVSNSEDVGSTSHVSSGHRGFDLNIPPIPEFS---MVNGDEEV
pt017464_POPTR_ RCHYEGIIGGGEKSGVTSTSESAGSTNTR--THSHNEFDLNIPALPEFSSCFSVSGEDEV
gm014082_Glyma0 RCHYEG--------GNSAVTASEGVGSTH--TGSHRDFDLNLPAFPDFSARFFV--DDEV
                ******          ::.: * .  .*   : .*. ****:*.:*:**    *  ::**

AT5G04340.1     MSPMP-AKKLRFDFP----EKP---
pt017464_POPTR_ MSPLPAAKKLRISMP-PRFEVSQAQ
gm014082_Glyma0 TSPHP-SKKSRFNLTIPKIEIPQY-
                 ** * :** *:.:.    * .
BoxShade v3.31 C (beta, 970507) Output
AT5G04340.1     M A L E T L T S P R L S S P M P T L F Q D S A L G F H G S - - - K G K R S K R S R S E F D - - R Q S L T E D E Y I A L C
pt017464_POPTR_    M A L E A L N S P T T A P P S F Q - F E D L S L P C A G E P W V K R K R S K R P R L D H Q - - - P - - T E E E Y L A L C
gm014082_Glyma0    M A L E A L Q S P T T A T P S F S P F E E T S L S Y L E T P W T K G K R S K R S R T E Q Q L Q H P S C T E E E Y L A L C
 
AT5G04340.1     L M L L A R D G D R N R D L D L P S S S - - - S S P P L L P P L P T P I Y K C S V C D K A F S S Y Q A L G G H K A S H R
pt017464_POPTR_    L V M L A R G H Q K S L T P S T V F T S - - - - - - - - - S E L K N S - Y K C S V C N K E F P S Y Q A L G G H K A S H R
gm014082_Glyma0    L I M L A R G G A G S V S T A K P A V S D N N S A P - - L S A A K L S - Y K C S V C N K A F S S Y Q A L G G H K A S H R
 
AT5G04340.1     K S F S L T Q S A G G D E L S T S S A I T - - - - - T S G I S G G G G G S V K S H V C S I C H K S F A T G Q A L G G H K
pt017464_POPTR_    K L A G - - - - - G G E D Q T T S S T T T S A I T A T K T V S N G S G - - - K T H E C S I C H K T F P T G Q A L G G H K
gm014082_Glyma0    K L A - - - - - - - G E N H P T S S A V T - - - - - T S S A S N G G G - - - R T H E C S I C H K T F S T G Q A L G G H K
 
AT5G04340.1     R C H Y E G K N G G G - - - V S S S V S N S E D V G S T S H V S S G H R G F D L N I P P I P E F S - - - M V N G D E E V
pt017464_POPTR_    R C H Y E G I I G G G E K S G V T S T S E S A G S T N T R - - T H S H N E F D L N I P A L P E F S S C F S V S G E D E V
gm014082_Glyma0    R C H Y E G - - - - - - - - G N S A V T A S E G V G S T H - - T G S H R D F D L N L P A F P D F S A R F F V - - D D E V
 
AT5G04340.1     M S P M P - A K K L R F D F P - - - - E K P - - -
pt017464_POPTR_    M S P L P A A K K L R I S M P - P R F E V S Q A Q
gm014082_Glyma0    T S P H P - S K K S R F N L T I P K I E I P Q Y -
 
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