fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G04340.1 EDEYIALCLMLLARDG at 52/238 in AT5G04340.1
SGHRGFDLNIPPIPEFS at 201/238 in AT5G04340.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt038538 not found in 252aa AT1G27730.1 not_not 0.435672514 III
Pt029671 not found in 286aa AT1G27730.1 not_not 0.400584795 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G04340.1     ----------------------------------------------MALETLTSPRLSSP
pt038538_POPTR_ ----------------------------------------------MALEALNSPTTATP
pt029671_POPTR_ MADDDDRPPPLSLSLSIPFFLSLEILFVCSSRCPLTQENSVSRIQIMALEALNSPTTAAP
                                                              ****:*.**  ::*

AT5G04340.1     MPTLFQDSALGFH-----GSKGKRSKRSRSEFDRQSLTEDEYIALCLMLLARDGDRNRDL
pt038538_POPTR_ S---FQFEESSTHCVVEPWAKRKRSKRPRLD---HQPTEEEYLALCLVMLARGSTN----
pt029671_POPTR_ ----FNYEET--------WIKRKRSKRPRSE---SPSTEEEYLALCLIMLARGGS-----
                    *: .            * *****.* :      **:**:****::***..      

AT5G04340.1     DLPSSSSSPP--------LLPPLPT------PIYKCSVCDKAFSSYQALGGHKASHRKSF
pt038538_POPTR_ -LP----IPALDGHHKKSLAPPTASTSSEQKISYKCSVCNKEFPSYQALGGHKASHRK--
pt029671_POPTR_ --P----APP---------QPPTLD------LSYKCTVCNKAFSSYQALGGHKASHRKSS
                  *     *.          **           ***:**:* *.**************  

AT5G04340.1     SLTQSAGGDELSTSSAITTSGISGG-GGGSVKSHVCSICHKSFATGQALGGHKRCHYEGK
pt038538_POPTR_ ----LAGGGEDQTTSCTTTSATTTPVSNGSGRVHECSICHRTFPTGQALGGHKRCHYEGI
pt029671_POPTR_ SESTVATAAENPSTSTTTNTTTTTT----NGRTHECSICHKTFLTGQALGGHKRCHYEGT
                     * . *  ::*  *.:  :      . : * *****::* *************** 

AT5G04340.1     NGG---GVSSSVSNSED---VG------STSHVSSGHRGFDLNIPPIPEFSM-------V
pt038538_POPTR_ IGG---AEKSGVTSTSE----GAGSTNTRTHSHNHSHHDFDLNVPALPEFSSDFF----V
pt029671_POPTR_ IGGNNSSSASAAITTSDGGAVGGGGVIQSKSQRSGGGFDFDLNLPALPEFEGPRISLQAL
                 **   .  *.. .:.:    *       .   . .  .****:*.:***.        :

AT5G04340.1     NGDEEVMSPMPAKK-------LRFDFPEKP--------
pt038538_POPTR_ SGDDEVMSPLPAAKRIRILMAPRIEVSQAQ--------
pt029671_POPTR_ CGDQEVESPLPGKK-------PRLMFSLKQEKTDMGSS
                 **:** **:*. *        *: ..
BoxShade v3.31 C (beta, 970507) Output
AT5G04340.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E T L T S P R L S S P
pt038538_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L N S P T T A T P
pt029671_POPTR_    M A D D D D R P P P L S L S L S I P F F L S L E I L F V C S S R C P L T Q E N S V S R I Q I M A L E A L N S P T T A A P
 
AT5G04340.1     M P T L F Q D S A L G F H - - - - - G S K G K R S K R S R S E F D R Q S L T E D E Y I A L C L M L L A R D G D R N R D L
pt038538_POPTR_    S - - - F Q F E E S S T H C V V E P W A K R K R S K R P R L D - - - H Q P T E E E Y L A L C L V M L A R G S T N - - - -
pt029671_POPTR_    - - - - F N Y E E T - - - - - - - - W I K R K R S K R P R S E - - - S P S T E E E Y L A L C L I M L A R G G S - - - - -
 
AT5G04340.1     D L P S S S S S P P - - - - - - - - L L P P L P T - - - - - - P I Y K C S V C D K A F S S Y Q A L G G H K A S H R K S F
pt038538_POPTR_    - L P - - - - I P A L D G H H K K S L A P P T A S T S S E Q K I S Y K C S V C N K E F P S Y Q A L G G H K A S H R K - -
pt029671_POPTR_    - - P - - - - A P P - - - - - - - - - Q P P T L D - - - - - - L S Y K C T V C N K A F S S Y Q A L G G H K A S H R K S S
 
AT5G04340.1     S L T Q S A G G D E L S T S S A I T T S G I S G G - G G G S V K S H V C S I C H K S F A T G Q A L G G H K R C H Y E G K
pt038538_POPTR_    - - - - L A G G G E D Q T T S C T T T S A T T T P V S N G S G R V H E C S I C H R T F P T G Q A L G G H K R C H Y E G I
pt029671_POPTR_    S E S T V A T A A E N P S T S T T T N T T T T T T - - - - N G R T H E C S I C H K T F L T G Q A L G G H K R C H Y E G T
 
AT5G04340.1     N G G - - - G V S S S V S N S E D - - - V G - - - - - - S T S H V S S G H R G F D L N I P P I P E F S M - - - - - - - V
pt038538_POPTR_    I G G - - - A E K S G V T S T S E - - - - G A G S T N T R T H S H N H S H H D F D L N V P A L P E F S S D F F - - - - V
pt029671_POPTR_    I G G N N S S S A S A A I T T S D G G A V G G G G V I Q S K S Q R S G G G F D F D L N L P A L P E F E G P R I S L Q A L
 
AT5G04340.1     N G D E E V M S P M P A K K - - - - - - - L R F D F P E K P - - - - - - - -
pt038538_POPTR_    S G D D E V M S P L P A A K R I R I L M A P R I E V S Q A Q - - - - - - - -
pt029671_POPTR_    C G D Q E V E S P L P G K K - - - - - - - P R L M F S L K Q E K T D M G S S
 
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