fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G04340.1 EDEYIALCLMLLARDG at 52/238 in AT5G04340.1
SGHRGFDLNIPPIPEFS at 201/238 in AT5G04340.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm039438 not found in 233aa AT1G27730.1 not_not 0.441520467 III
Gm008898 not found in 233aa AT1G27730.1 not_not 0.441520467 III
Gm047952 not found in 240aa AT1G27730.1 not_not 0.435672514 III
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G04340.1     MALETLTSPRLSSPMPTLFQDSALGF---HGSKGKRSKR-SR--SEFDRQSLTEDEYIAL
gm039438_Glyma1 MALETLNSPTTTAPSF-PFDDPTI-----PWAKRKRSKRCSR-----DHPS--EEEYLAL
gm047952_Glyma1 MALEALNSPTTTAPSF-PFDDPTI-----PWAKRKRSKR-SR-----DHPS--EEEYLAL
gm008898_Glyma0 MALEALQSPRTATPSFSPFEETNLSYLETPWTKGKRSKR-SRMEQQLQHSSCTEEEYLAL
                ****:* **  ::*    *::. :       :* ***** **     :: *  *:**:**

AT5G04340.1     CLMLLARDGDRNRDLDLP-SSSSSPPLLP-PLPTPI------YKCSVCDKAFSSYQALGG
gm039438_Glyma1 CLIMLARGGTT--------RRVSTPP----PQPTPDPSTKLSYKCSVCNKSFPSYQALGG
gm047952_Glyma1 CLIMLARGGTTT----VNNRHVSPPPPQPQPQPTPDPSTKLSYKCSVCDKSFPSYQALGG
gm008898_Glyma0 CLIMLAHGGAGG----VP----AAKPAVSDNNSAPLPAAKLSYKCSVCNKAFSSYQALGG
                **::**:.*             :. *      .:*       ******:*:*.*******

AT5G04340.1     HKASHRKSFSLTQSAGGDELSTSSAITTSGISGGGGGSVKSHVCSICHKSFATGQALGGH
gm039438_Glyma1 HKASHRK---LAASGGEDQPTTTSSAASSANTASGG---RTHECSICHKSFPTGQALGGH
gm047952_Glyma1 HKASHRK---LAGAAEDQPPSTTTSSAAATSSASGG---KAHECSICHKSFPTGQALGGH
gm008898_Glyma0 HKASHRK---LGG----EHHSTSSAVTTSSASNGGA---RTHECSICQKTFPTGQALGGH
                *******   *      :  :*::: :::  : .*.   ::* ****:*:*.********

AT5G04340.1     KRCHYEGKNGGG---VSSSVS-NSEDVGSTSHVSSG-HRGFDLNIPPIPEFSMVNG-DEE
gm039438_Glyma1 KRCHYEGNSNGNNNNSNSSVTAASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTKVG-EDE
gm047952_Glyma1 KRCHYEGNGNGNNNNSNSVVTVASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTKVG-EDE
gm008898_Glyma0 KRCHYEG--------GNSAVT-ASEGVGSTHT---GSHRDFDLNLPAFPDFSTRFFVDDE
                *******         .* *:  **.****     * **.****:*.:*:**     ::*

AT5G04340.1     VMSPMPAKKLRFDFP----EKP---
gm039438_Glyma1 VESPHPVMKKPRPFVIPKIEIPQYQ
gm047952_Glyma1 VESPHPVMKKPRLFVIPKIEIPQFQ
gm008898_Glyma0 VTSPHPSKKSRLNLTIPKIEIPQY-
                * ** *  *    :     * *
BoxShade v3.31 C (beta, 970507) Output
AT5G04340.1     M A L E T L T S P R L S S P M P T L F Q D S A L G F - - - H G S K G K R S K R - S R - - S E F D R Q S L T E D E Y I A L
gm039438_Glyma1    M A L E T L N S P T T T A P S F - P F D D P T I - - - - - P W A K R K R S K R C S R - - - - - D H P S - - E E E Y L A L
gm047952_Glyma1    M A L E A L N S P T T T A P S F - P F D D P T I - - - - - P W A K R K R S K R - S R - - - - - D H P S - - E E E Y L A L
gm008898_Glyma0    M A L E A L Q S P R T A T P S F S P F E E T N L S Y L E T P W T K G K R S K R - S R M E Q Q L Q H S S C T E E E Y L A L
 
AT5G04340.1     C L M L L A R D G D R N R D L D L P - S S S S S P P L L P - P L P T P I - - - - - - Y K C S V C D K A F S S Y Q A L G G
gm039438_Glyma1    C L I M L A R G G T T - - - - - - - - R R V S T P P - - - - P Q P T P D P S T K L S Y K C S V C N K S F P S Y Q A L G G
gm047952_Glyma1    C L I M L A R G G T T T - - - - V N N R H V S P P P P Q P Q P Q P T P D P S T K L S Y K C S V C D K S F P S Y Q A L G G
gm008898_Glyma0    C L I M L A H G G A G G - - - - V P - - - - A A K P A V S D N N S A P L P A A K L S Y K C S V C N K A F S S Y Q A L G G
 
AT5G04340.1     H K A S H R K S F S L T Q S A G G D E L S T S S A I T T S G I S G G G G G S V K S H V C S I C H K S F A T G Q A L G G H
gm039438_Glyma1    H K A S H R K - - - L A A S G G E D Q P T T T S S A A S S A N T A S G G - - - R T H E C S I C H K S F P T G Q A L G G H
gm047952_Glyma1    H K A S H R K - - - L A G A A E D Q P P S T T T S S A A A T S S A S G G - - - K A H E C S I C H K S F P T G Q A L G G H
gm008898_Glyma0    H K A S H R K - - - L G G - - - - E H H S T S S A V T T S S A S N G G A - - - R T H E C S I C Q K T F P T G Q A L G G H
 
AT5G04340.1     K R C H Y E G K N G G G - - - V S S S V S - N S E D V G S T S H V S S G - H R G F D L N I P P I P E F S M V N G - D E E
gm039438_Glyma1    K R C H Y E G N S N G N N N N S N S S V T A A S E G V G S T H T V S H G H H R D F D L N I P A F P D F S T K V G - E D E
gm047952_Glyma1    K R C H Y E G N G N G N N N N S N S V V T V A S E G V G S T H T V S H G H H R D F D L N I P A F P D F S T K V G - E D E
gm008898_Glyma0    K R C H Y E G - - - - - - - - G N S A V T - A S E G V G S T H T - - - G S H R D F D L N L P A F P D F S T R F F V D D E
 
AT5G04340.1     V M S P M P A K K L R F D F P - - - - E K P - - -
gm039438_Glyma1    V E S P H P V M K K P R P F V I P K I E I P Q Y Q
gm047952_Glyma1    V E S P H P V M K K P R L F V I P K I E I P Q F Q
gm008898_Glyma0    V T S P H P S K K S R L N L T I P K I E I P Q Y -
 
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