fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G04760.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm054343 not found in 236aa AT5G04760.1 not_1st 0.596618357 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G04760.1     -----------MASSQWTRSEDKMFEQALVLFPEGSPNRWERIADQL-HKSAGEVREHYE
gm054343_Glyma2 MFQESSATRWPTQPTQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAVEVREHYE
                             .:**** .**:**:**::.**. *:***:****:  *** *******

AT5G04760.1     VLVHDVFEIDSGRVDVPDYMDDSAAAA-------AGWDSAGQISFGSK---HGESERKRG
gm054343_Glyma2 ALVHDVFEIDSGRVEVPSYVDDSVATPPSGGAEISTWDNANQISFGSKPKQQGDNERKKG
                .*************:**.*:***.*:.       : **.*.*******   :*:.***:*

AT5G04760.1     TPWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRS
gm054343_Glyma2 TPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRS
                *****:**:******.::******************************************

AT5G04760.1     SIHDITTVDATLAMPGSNMDWTGQHGSPVQA----PQQQQI--MSEFGQQLNPGHFEDFG
gm054343_Glyma2 SIHDITTVDSNSVPVPIDQNWVPPPGGSVQQSLQYPSSNMLDQMGTFG-------YSNYG
                *********:. .    : :*.   *..**     *..: :  *. **       :.::*

AT5G04760.1     FRM
gm054343_Glyma2 FGM
                * *
BoxShade v3.31 C (beta, 970507) Output
AT5G04760.1     - - - - - - - - - - - M A S S Q W T R S E D K M F E Q A L V L F P E G S P N R W E R I A D Q L - H K S A G E V R E H Y E
gm054343_Glyma2    M F Q E S S A T R W P T Q P T Q W T R Y H D K L F E R A L L V V P E D L P D R W E K I A D Q V P G K S A V E V R E H Y E
 
AT5G04760.1     V L V H D V F E I D S G R V D V P D Y M D D S A A A A - - - - - - - A G W D S A G Q I S F G S K - - - H G E S E R K R G
gm054343_Glyma2    A L V H D V F E I D S G R V E V P S Y V D D S V A T P P S G G A E I S T W D N A N Q I S F G S K P K Q Q G D N E R K K G
 
AT5G04760.1     T P W T E N E H K L F L I G L K R Y G K G D W R S I S R N V V V T R T P T Q V A S H A Q K Y F L R Q N S V K K E R K R S
gm054343_Glyma2    T P W T E E E H R L F L I G L S K F G K G D W R S I S R N V V V T R T P T Q V A S H A Q K Y F L R Q N S V K K E R K R S
 
AT5G04760.1     S I H D I T T V D A T L A M P G S N M D W T G Q H G S P V Q A - - - - P Q Q Q Q I - - M S E F G Q Q L N P G H F E D F G
gm054343_Glyma2    S I H D I T T V D S N S V P V P I D Q N W V P P P G G S V Q Q S L Q Y P S S N M L D Q M G T F G - - - - - - - Y S N Y G
 
AT5G04760.1     F R M
gm054343_Glyma2    F G M
 
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