fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G04820.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029073 not found in 247aa AT5G04820.1 1st_1st 0.439716312 Ia
Pt042360 not found in 214aa AT5G04820.1 1st_1st 0.465721040 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G04820.1     MGKKKMKLSSLFK----------------GGAGGLLAVPLCYNAKTLSFRVG-DDMIKTV
gm029073_Glyma1 MGKKSLKLPSLFKTKEPPRNQHHHHHHNHNPNHPWQFMPSCGHSKTLSFRGGDDDMFKTV
pt042360_POPTR_ -----MKIPALFKIKETKQS--------------WQKWPSCKHPKTLSFRGG-DDVIKTV
                     :*:.:***                         * * :.****** * **::***

AT5G04820.1     NSVFFDHHHNNNNGGDLLEAETPESWFTNSSETASHSTESDQD--LDAESLEMVVRGVVR
gm029073_Glyma1 NSVFFDPSAES-------TIETPKSWFTTSSESASISTESEDYHYCDGESLEMLVRG-VR
pt042360_POPTR_ NSVFFDPSER---------VETPESWFTNSSETTSFSTESEGF---DGESLEVVVRG-VR
                ******   .          ***:****.***::* ****:     *.****::*** **

AT5G04820.1     SERLFFDPGVTSSILEEIEEKSKSDLKSKETVAVGEDRSTPIEEISVAVAMESEDPYGDF
gm029073_Glyma1 SERLFFEPGDTSSILEK-----------------AKASGFPFKE-SVVLAMESEDPYEDF
pt042360_POPTR_ SERLFFEPGDTNSILEE-----------------AKTGGFPFKE-SVVLAMESEDPYVDF
                ******:** *.****:                 .:  . *::* **.:******** **

AT5G04820.1     RRSMEEMVTSHGELAKDWESLESMLAWYLRMNGRKSHGVIVSAFVDLLSGLSDSGAGITS
gm029073_Glyma1 KRSMEEMVESHG--VRDWEGLEELLTWYLRVNGRNNHGFIVGAFVDLLFSLAASNG---S
pt042360_POPTR_ RRSMEEMVESHG--LKDWDCLEELLGWYLKVNGKKNHGYIVGAFVDLLVGIAAA------
                :******* ***   :**: **.:* ***::**::.** **.****** .:: :      

AT5G04820.1     ASVSDSARYSTAVSSLP-SSPVYSLSQGQTEIQEE----ERRSC
gm029073_Glyma1 ITCSDSTSYSSAVSSFA-SSP---L-NGQNEIVEHGIGNENDD-
pt042360_POPTR_ -SCSDSTSFSSAVSSFSPSSPLCSL-KGQNEIDEE---------
                 : ***: :*:****:. ***   * :**.** *.
BoxShade v3.31 C (beta, 970507) Output
AT5G04820.1     M G K K K M K L S S L F K - - - - - - - - - - - - - - - - G G A G G L L A V P L C Y N A K T L S F R V G - D D M I K T V
gm029073_Glyma1    M G K K S L K L P S L F K T K E P P R N Q H H H H H H N H N P N H P W Q F M P S C G H S K T L S F R G G D D D M F K T V
pt042360_POPTR_    - - - - - M K I P A L F K I K E T K Q S - - - - - - - - - - - - - - W Q K W P S C K H P K T L S F R G G - D D V I K T V
 
AT5G04820.1     N S V F F D H H H N N N N G G D L L E A E T P E S W F T N S S E T A S H S T E S D Q D - - L D A E S L E M V V R G V V R
gm029073_Glyma1    N S V F F D P S A E S - - - - - - - T I E T P K S W F T T S S E S A S I S T E S E D Y H Y C D G E S L E M L V R G - V R
pt042360_POPTR_    N S V F F D P S E R - - - - - - - - - V E T P E S W F T N S S E T T S F S T E S E G F - - - D G E S L E V V V R G - V R
 
AT5G04820.1     S E R L F F D P G V T S S I L E E I E E K S K S D L K S K E T V A V G E D R S T P I E E I S V A V A M E S E D P Y G D F
gm029073_Glyma1    S E R L F F E P G D T S S I L E K - - - - - - - - - - - - - - - - - A K A S G F P F K E - S V V L A M E S E D P Y E D F
pt042360_POPTR_    S E R L F F E P G D T N S I L E E - - - - - - - - - - - - - - - - - A K T G G F P F K E - S V V L A M E S E D P Y V D F
 
AT5G04820.1     R R S M E E M V T S H G E L A K D W E S L E S M L A W Y L R M N G R K S H G V I V S A F V D L L S G L S D S G A G I T S
gm029073_Glyma1    K R S M E E M V E S H G - - V R D W E G L E E L L T W Y L R V N G R N N H G F I V G A F V D L L F S L A A S N G - - - S
pt042360_POPTR_    R R S M E E M V E S H G - - L K D W D C L E E L L G W Y L K V N G K K N H G Y I V G A F V D L L V G I A A A - - - - - -
 
AT5G04820.1     A S V S D S A R Y S T A V S S L P - S S P V Y S L S Q G Q T E I Q E E - - - - E R R S C
gm029073_Glyma1    I T C S D S T S Y S S A V S S F A - S S P - - - L - N G Q N E I V E H G I G N E N D D -
pt042360_POPTR_    - S C S D S T S F S S A V S S F S P S S P L C S L - K G Q N E I D E E - - - - - - - - -
 
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