fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G04820.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029073 not found in 247aa AT5G04820.1 1st_1st 0.439716312 Ia
Gm054348 not found in 235aa AT5G04820.1 not_1st 0.437352245 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G04820.1     MGKKKMKLSSLFKGGA----------------GGLLAVPLCYNAKTLSFRVG-DDMIKTV
gm054348_Glyma2 MGKKSLKLPSLFKTKEAPRNHH----------HPWQFMPSCGHSKTLSFRGGDDDMFKTV
gm029073_Glyma1 MGKKSLKLPSLFKTKEPPRNQHHHHHHNHNPNHPWQFMPSCGHSKTLSFRGGDDDMFKTV
                ****.:**.****                        :* * ::****** * ***:***

AT5G04820.1     NSVFFDHHHNNNNGGDLLEAETPESWFTNSSETASHSTESDQ--DLDAESLEMVVRGVVR
gm054348_Glyma2 NSMFFDPSAEST-------IETPKSWFTTSSESASISTESEDYYYCDGESLEMLVRG-VR
gm029073_Glyma1 NSVFFDPSAEST-------IETPKSWFTTSSESASISTESEDYHYCDGESLEMLVRG-VR
                **:***   :..        ***:****.***:** ****::    *.*****:*** **

AT5G04820.1     SERLFFDPGVTSSILEEIEEKSKSDLKSKETVAVGEDRSTPIEEISVAVAMESEDPYGDF
gm054348_Glyma2 SERLFFEPGDTSSIL----EKAKAS-------------GFPFKE-SVVLAMESEDPYEDF
gm029073_Glyma1 SERLFFEPGDTSSIL----EKAKAS-------------GFPFKE-SVVLAMESEDPYEDF
                ******:** *****    **:*:.             . *::* **.:******** **

AT5G04820.1     RRSMEEMVTSHGELAKDWESLESMLAWYLRMNGRKSHGVIVSAFVDLLSGLSDSGAGITS
gm054348_Glyma2 KRSMEEMVESHG--VRDWEGLEELLTWYLRVNGKNNHGFIVGAFVDLLFSLAASNGSNT-
gm029073_Glyma1 KRSMEEMVESHG--VRDWEGLEELLTWYLRVNGRNNHGFIVGAFVDLLFSLAASNGSIT-
                :******* ***  .:***.**.:*:****:**::.**.**.****** .*: *... * 

AT5G04820.1     ASVSDSARYSTAVSSLPSSPVYSLSQGQTEIQE-----EERRSC
gm054348_Glyma2 --CSDSTSYSSAVSSFASSPL----SGQNEIVEHGIGNDD----
gm029073_Glyma1 --CSDSTSYSSAVSSFASSPL----NGQNEIVEHGIGNENDD--
                   ***: **:****:.***:    .**.** *     ::
BoxShade v3.31 C (beta, 970507) Output
AT5G04820.1     M G K K K M K L S S L F K G G A - - - - - - - - - - - - - - - - G G L L A V P L C Y N A K T L S F R V G - D D M I K T V
gm054348_Glyma2    M G K K S L K L P S L F K T K E A P R N H H - - - - - - - - - - H P W Q F M P S C G H S K T L S F R G G D D D M F K T V
gm029073_Glyma1    M G K K S L K L P S L F K T K E P P R N Q H H H H H H N H N P N H P W Q F M P S C G H S K T L S F R G G D D D M F K T V
 
AT5G04820.1     N S V F F D H H H N N N N G G D L L E A E T P E S W F T N S S E T A S H S T E S D Q - - D L D A E S L E M V V R G V V R
gm054348_Glyma2    N S M F F D P S A E S T - - - - - - - I E T P K S W F T T S S E S A S I S T E S E D Y Y Y C D G E S L E M L V R G - V R
gm029073_Glyma1    N S V F F D P S A E S T - - - - - - - I E T P K S W F T T S S E S A S I S T E S E D Y H Y C D G E S L E M L V R G - V R
 
AT5G04820.1     S E R L F F D P G V T S S I L E E I E E K S K S D L K S K E T V A V G E D R S T P I E E I S V A V A M E S E D P Y G D F
gm054348_Glyma2    S E R L F F E P G D T S S I L - - - - E K A K A S - - - - - - - - - - - - - G F P F K E - S V V L A M E S E D P Y E D F
gm029073_Glyma1    S E R L F F E P G D T S S I L - - - - E K A K A S - - - - - - - - - - - - - G F P F K E - S V V L A M E S E D P Y E D F
 
AT5G04820.1     R R S M E E M V T S H G E L A K D W E S L E S M L A W Y L R M N G R K S H G V I V S A F V D L L S G L S D S G A G I T S
gm054348_Glyma2    K R S M E E M V E S H G - - V R D W E G L E E L L T W Y L R V N G K N N H G F I V G A F V D L L F S L A A S N G S N T -
gm029073_Glyma1    K R S M E E M V E S H G - - V R D W E G L E E L L T W Y L R V N G R N N H G F I V G A F V D L L F S L A A S N G S I T -
 
AT5G04820.1     A S V S D S A R Y S T A V S S L P S S P V Y S L S Q G Q T E I Q E - - - - - E E R R S C
gm054348_Glyma2    - - C S D S T S Y S S A V S S F A S S P L - - - - S G Q N E I V E H G I G N D D - - - -
gm029073_Glyma1    - - C S D S T S Y S S A V S S F A S S P L - - - - N G Q N E I V E H G I G N E N D D - -
 
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