fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G04840.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt042957 not found in 293aa AT5G04840.1 1st_1st 0.430476190 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G04840.1     MSRPAPLPPRCPIPKKLSLSPVADTFYSSSSPIESYIGQYKSSTQDSRLEDQPAWLDELL
pt042957_POPTR_ MSRQSLLPPRCPFRKHVVSHPIHE-----SSP-----QHHRSPSQGSVLEEKPAWLDDLL
                *** : ******: *::   *: :     ***      :::*.:*.* **::*****:**

AT5G04840.1     CDKTDGLLTRGGPLRRSASDSVVLLGDISATFSGFDQSEDE-ESLSSEACGDLESACVYG
pt042957_POPTR_ SDEDAD--SKGKCLRRSASDSVTLLDGIVDSFSGLSPYNDEAASGGNETCSGLESASMYG
                .*:  .  ::*  *********.**..*  :***:.  :**  * ..*:*..****.:**

AT5G04840.1     PNSPRAKNNSSFSNNPIASAFSDYGSQTPPQNLDDT--VKGINRSPVAENACGSMGIPNA
pt042957_POPTR_ PNSPRRRGNVTFSENAIASALSEYAFQNPLQYVDGSLCISGIKPLDQMGNACGSAGELNG
                ***** :.* :**:*.****:*:*. *.* * :*.:  :.**:      ***** *  *.

AT5G04840.1     KRNP-----GQRSRVRKLQYIAELERTVGMLQTVEADLSVRVASLLQTRATLSLENSQLK
pt042957_POPTR_ ETNPVKRHSGQRSRVRKLQYIAELERTVNVLQTLESELAVKVASMLQKRATLSLENNTLK
                : **     *******************.:***:*::*:*:***:**.********. **

AT5G04840.1     QQMAILKQDKLIREGEYQLLKKEAQRLKSGLGYLGSTNNSNRLVRSYSAGSNVAPRTASS
pt042957_POPTR_ QQEARIRQEKLIAEAQHKALKKEAERMKNKLGF------TNLKFRNYSRSSR-PPEAARS
                ** * ::*:*** *.::: *****:*:*. **:      :*  .*.** .*. .*.:* *

AT5G04840.1     HLDWNLLDLTKLNLN
pt042957_POPTR_ EVTWQ---MAKLNLN
                .: *:   ::*****
BoxShade v3.31 C (beta, 970507) Output
AT5G04840.1     M S R P A P L P P R C P I P K K L S L S P V A D T F Y S S S S P I E S Y I G Q Y K S S T Q D S R L E D Q P A W L D E L L
pt042957_POPTR_    M S R Q S L L P P R C P F R K H V V S H P I H E - - - - - S S P - - - - - Q H H R S P S Q G S V L E E K P A W L D D L L
 
AT5G04840.1     C D K T D G L L T R G G P L R R S A S D S V V L L G D I S A T F S G F D Q S E D E - E S L S S E A C G D L E S A C V Y G
pt042957_POPTR_    S D E D A D - - S K G K C L R R S A S D S V T L L D G I V D S F S G L S P Y N D E A A S G G N E T C S G L E S A S M Y G
 
AT5G04840.1     P N S P R A K N N S S F S N N P I A S A F S D Y G S Q T P P Q N L D D T - - V K G I N R S P V A E N A C G S M G I P N A
pt042957_POPTR_    P N S P R R R G N V T F S E N A I A S A L S E Y A F Q N P L Q Y V D G S L C I S G I K P L D Q M G N A C G S A G E L N G
 
AT5G04840.1     K R N P - - - - - G Q R S R V R K L Q Y I A E L E R T V G M L Q T V E A D L S V R V A S L L Q T R A T L S L E N S Q L K
pt042957_POPTR_    E T N P V K R H S G Q R S R V R K L Q Y I A E L E R T V N V L Q T L E S E L A V K V A S M L Q K R A T L S L E N N T L K
 
AT5G04840.1     Q Q M A I L K Q D K L I R E G E Y Q L L K K E A Q R L K S G L G Y L G S T N N S N R L V R S Y S A G S N V A P R T A S S
pt042957_POPTR_    Q Q E A R I R Q E K L I A E A Q H K A L K K E A E R M K N K L G F - - - - - - T N L K F R N Y S R S S R - P P E A A R S
 
AT5G04840.1     H L D W N L L D L T K L N L N
pt042957_POPTR_    E V T W Q - - - M A K L N L N
 
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