fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G06250.1 SSRTVRLFGVNLECQ at 214/267 in AT5G06250.1
SSRTVRLFGVNLECQ at 229/282 in AT5G06250.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os010946 PSKRVRLFGVNLDCA in 262/311 AT2G46870.1 1st_not 0.440579710 II
GKARCSLNLDL in 306/311
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G06250.1     MSVNHYSTDHHHTLLWQQQQHRHTTDTSETTTTATW-----------LHDDLKESLFEKS
Os010946_Os03t0 --------------------MEFITPIVRPASAAAGGGEVQESGGRSLAAVEKEHMFDKV
                                     .. *   ..:::*:            *    ** :*:* 

AT5G06250.1     LTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRY
Os010946_Os03t0 VTPSDVGKLNRLVIPKQHAEKYFPL----------DAASNEKGLLLSFEDRTGKPWRFRY
                :************************          *::*.***:******.:**.*****

AT5G06250.1     SYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSR--RLFIGWRRR---------
Os010946_Os03t0 SYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWRRRPDVVAALQP
                **********:*********:*:**.**.* * *  .::   ****.****         

AT5G06250.1     ----------------------GQGSSSSVAATNSA---VNTSSMGALSYHQIHATRA--
Os010946_Os03t0 PTHRFAHHLPSSIPFAPWAHHHGHGAAAAAAAAAGARFLLPPSSTPIYDHHRRHAHAVGY
                                      *:*::::.**: .*   : .**    .:*: **  .  

AT5G06250.1     ---AVATAAET----------------------------HSTPSSSVVGSSRTVRLFGVN
Os010946_Os03t0 DAYAAATSRQVLFYRPLPPQQQHHPAVVLESVPVRMTAGHAEPPSA---PSKRVRLFGVN
                   *.**: :.                            *: *.*:   .*: *******

AT5G06250.1     LECQMDENDGDDSVAVATTVESPDGYYGQNMYYYYSHPHN----------MVILTLL
Os010946_Os03t0 LDCANSEQ--DHAGVVGKTAPPP----------LPSPPSSSSSSSGKARCSLNLDL-
                *:*  .*:  *.: .*..*. .*            * * .           : * *
BoxShade v3.31 C (beta, 970507) Output
AT5G06250.1     M S V N H Y S T D H H H T L L W Q Q Q Q H R H T T D T S E T T T T A T W - - - - - - - - - - - L H D D L K E S L F E K S
Os010946_Os03t0    - - - - - - - - - - - - - - - - - - - - M E F I T P I V R P A S A A A G G G E V Q E S G G R S L A A V E K E H M F D K V
 
AT5G06250.1     L T P S D V G K L N R L V I P K Q H A E K Y F P L N A V L V S S A A A D T S S S E K G M L L S F E D E S G K S W R F R Y
Os010946_Os03t0    V T P S D V G K L N R L V I P K Q H A E K Y F P L - - - - - - - - - - D A A S N E K G L L L S F E D R T G K P W R F R Y
 
AT5G06250.1     S Y W N S S Q S Y V L T K G W S R F V K D K Q L D P G D V V F F Q R H R S D S R - - R L F I G W R R R - - - - - - - - -
Os010946_Os03t0    S Y W N S S Q S Y V M T K G W S R F V K E K R L D A G D T V S F G R G V G E A A R G R L F I D W R R R P D V V A A L Q P
 
AT5G06250.1     - - - - - - - - - - - - - - - - - - - - - - G Q G S S S S V A A T N S A - - - V N T S S M G A L S Y H Q I H A T R A - -
Os010946_Os03t0    P T H R F A H H L P S S I P F A P W A H H H G H G A A A A A A A A A G A R F L L P P S S T P I Y D H H R R H A H A V G Y
 
AT5G06250.1     - - - A V A T A A E T - - - - - - - - - - - - - - - - - - - - - - - - - - - - H S T P S S S V V G S S R T V R L F G V N
Os010946_Os03t0    D A Y A A A T S R Q V L F Y R P L P P Q Q Q H H P A V V L E S V P V R M T A G H A E P P S A - - - P S K R V R L F G V N
 
AT5G06250.1     L E C Q M D E N D G D D S V A V A T T V E S P D G Y Y G Q N M Y Y Y Y S H P H N - - - - - - - - - - M V I L T L L
Os010946_Os03t0    L D C A N S E Q - - D H A G V V G K T A P P P - - - - - - - - - - L P S P P S S S S S S S G K A R C S L N L D L -
 
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