fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G06250.1 SSRTVRLFGVNLECQ at 214/267 in AT5G06250.1
SSRTVRLFGVNLECQ at 229/282 in AT5G06250.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm004534 SSRVLRLFGVNMECQ in 275/344 AT2G36080.1 1st_not 0.513043478 II
Gm027089 not found in 219aa AT5G06250.1 not_1st 0.504347826 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G06250.1     MSVNHYSTDHHHTLLW----QQQQ-------------------HRHTTDTSETT---TTA
gm027089_Glyma1 MSINHYSMDLPEPTLC------------------------DDGNGNDNDNDENQ---TTT
gm004534_Glyma0 MSTNHYTMDLPEPTLWWPHPHQQQLTLIDPDPLPLNLNNDDNDNGDDNDNDENQTVTTTT
                ** ***: *  .. *                            : . .*..*.    **:

AT5G06250.1     TWLHDDL---KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSE-
gm027089_Glyma1 TGGEQEILDDKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLS--------GDSGGSEC
gm004534_Glyma0 TGGEEEIINNKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLS-------GGDSGSSEC
                *  .:::   **.:***.*************************.        .*:..** 

AT5G06250.1     KGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRR
gm027089_Glyma1 KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDAQR
gm004534_Glyma0 KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRADAQR
                **:**********.**********************:****:**.****:*:*** *::*

AT5G06250.1     LFIGWRRRGQGSSSSVAAT----------NSAVNTSSMG-----------------ALSY
gm027089_Glyma1 LFIGWRRRRQSDAALPPAH--------------NE-----GWTRGFYSAHHPYPTHHLHH
gm004534_Glyma0 LFIGWRRRRQSDALPPPAHVSSRKSGGDGNSSKNEGDVGVGWTRGFYPAHHPYPT---HH
                ******** *..:   .*               *                         :

AT5G06250.1     HQ-----------IHATRAAVATAAETH--STPSSSVVGSSRTVRLFGVNLECQMDENDG
gm027089_Glyma1 HQPSPY-QQQHDCLHA--------------GLSSIYLSISS-------------------
gm004534_Glyma0 HHPSPYHHQQDDSLHAVRGSQGQNQRTRPVGNSSSSSSSSSRVLRLFGVNMECQPEHDDS
                *:           :**              . .*     **                   

AT5G06250.1     DDSVA--------VATTVESPDGYYGQNMYY------YYSHPHNMVILTLL---
gm027089_Glyma1 ------------------------IHVNFLC-----------------------
gm004534_Glyma0 GPSTPQCSYNTNNILPSTQGTDIHSHLNFYQQQQTSNSKPPPHHMMIRHQPYYY
                                           *:
BoxShade v3.31 C (beta, 970507) Output
AT5G06250.1     M S V N H Y S T D H H H T L L W - - - - Q Q Q Q - - - - - - - - - - - - - - - - - - - H R H T T D T S E T T - - - T T A
gm027089_Glyma1    M S I N H Y S M D L P E P T L C - - - - - - - - - - - - - - - - - - - - - - - - D D G N G N D N D N D E N Q - - - T T T
gm004534_Glyma0    M S T N H Y T M D L P E P T L W W P H P H Q Q Q L T L I D P D P L P L N L N N D D N D N G D D N D N D E N Q T V T T T T
 
AT5G06250.1     T W L H D D L - - - K E S L F E K S L T P S D V G K L N R L V I P K Q H A E K Y F P L N A V L V S S A A A D T S S S E -
gm027089_Glyma1    T G G E Q E I L D D K E P M F E K P L T P S D V G K L N R L V I P K Q H A E K Y F P L S - - - - - - - - G D S G G S E C
gm004534_Glyma0    T G G E E E I I N N K E P M F E K P L T P S D V G K L N R L V I P K Q H A E K Y F P L S - - - - - - - G G D S G S S E C
 
AT5G06250.1     K G M L L S F E D E S G K S W R F R Y S Y W N S S Q S Y V L T K G W S R F V K D K Q L D P G D V V F F Q R H R S D S R R
gm027089_Glyma1    K G L L L S F E D E S G K C W R F R Y S Y W N S S Q S Y V L T K G W S R Y V K D K R L D A G D V V L F E R H R V D A Q R
gm004534_Glyma0    K G L L L S F E D E S G K C W R F R Y S Y W N S S Q S Y V L T K G W S R Y V K D K R L D A G D V V L F Q R H R A D A Q R
 
AT5G06250.1     L F I G W R R R G Q G S S S S V A A T - - - - - - - - - - N S A V N T S S M G - - - - - - - - - - - - - - - - - A L S Y
gm027089_Glyma1    L F I G W R R R R Q S D A A L P P A H - - - - - - - - - - - - - - N E - - - - - G W T R G F Y S A H H P Y P T H H L H H
gm004534_Glyma0    L F I G W R R R R Q S D A L P P P A H V S S R K S G G D G N S S K N E G D V G V G W T R G F Y P A H H P Y P T - - - H H
 
AT5G06250.1     H Q - - - - - - - - - - - I H A T R A A V A T A A E T H - - S T P S S S V V G S S R T V R L F G V N L E C Q M D E N D G
gm027089_Glyma1    H Q P S P Y - Q Q Q H D C L H A - - - - - - - - - - - - - - G L S S I Y L S I S S - - - - - - - - - - - - - - - - - - -
gm004534_Glyma0    H H P S P Y H H Q Q D D S L H A V R G S Q G Q N Q R T R P V G N S S S S S S S S S R V L R L F G V N M E C Q P E H D D S
 
AT5G06250.1     D D S V A - - - - - - - - V A T T V E S P D G Y Y G Q N M Y Y - - - - - - Y Y S H P H N M V I L T L L - - -
gm027089_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - I H V N F L C - - - - - - - - - - - - - - - - - - - - - - -
gm004534_Glyma0    G P S T P Q C S Y N T N N I L P S T Q G T D I H S H L N F Y Q Q Q Q T S N S K P P P H H M M I R H Q P Y Y Y
 
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