fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G06960.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm036516 not found in 469aa AT3G12250.2 1st_not 0.783018867 II
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G06960.1     ------------------------------------------------------------
gm036516_Glyma1 MGSRTTWRVVGVEDDKGAERGMPSFNSELPNSNSCYTEGNTIDSFRVSDFGAFDQSYHIE
                                                                            

AT5G06960.1     ------------------------------------------------------------
gm036516_Glyma1 DAVDLSGNPVYNSLKVNSQTISPGSVHISSLGQLPISLEKSPLTNQTEPPHRLRLQKVQS
                                                                            

AT5G06960.1     ------------------MGDTSPRTSVSTDGDTDHNNLMFDEGHLGIGASDSSDRSKSK
gm036516_Glyma1 SNPGTILVGNTDNWEESTMADASPRTDISTDGDTDDKNHPFDRNQALTAVSDSSDRSKDK
                                  *.*:****.:*******.:*  **..:   ..********.*

AT5G06960.1     MDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQ
gm036516_Glyma1 SDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ
                 ******************************.*******************:********

AT5G06960.1     AHSTAGDGAMAFDVEYRRWQEDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRI
gm036516_Glyma1 AHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRL
                **: :*:*** **.** ** *::***::** :*::***:*:***:****::***:*::*:

AT5G06960.1     KGNAAKSDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLIASQLEPLTEQQSLDINNLQQ
gm036516_Glyma1 KGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGITNLQQ
                ** ***:********************************:.********** :.*.****

AT5G06960.1     SSQQAEDALSQGMDNLQQSLADTLSSGTLGSS-SSGNVASYMGQMAMAMGKLGTLEGFIR
gm036516_Glyma1 SSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVASYMGQMAMAMGKLGTLEGFIQ
                *************: ******:***:*: .** **************************:

AT5G06960.1     QADNLRLQTYQQMVRLLTTRQSARALLAVHNYTLRLRALSSLWLARPRE
gm036516_Glyma1 QADNLRQQTLQQMHRILTTRQSARALLAIHDYISRLRALSSLWLARPRD
                ****** ** *** *:************:*:*  **************:
BoxShade v3.31 C (beta, 970507) Output
AT5G06960.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm036516_Glyma1    M G S R T T W R V V G V E D D K G A E R G M P S F N S E L P N S N S C Y T E G N T I D S F R V S D F G A F D Q S Y H I E
 
AT5G06960.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm036516_Glyma1    D A V D L S G N P V Y N S L K V N S Q T I S P G S V H I S S L G Q L P I S L E K S P L T N Q T E P P H R L R L Q K V Q S
 
AT5G06960.1     - - - - - - - - - - - - - - - - - - M G D T S P R T S V S T D G D T D H N N L M F D E G H L G I G A S D S S D R S K S K
gm036516_Glyma1    S N P G T I L V G N T D N W E E S T M A D A S P R T D I S T D G D T D D K N H P F D R N Q A L T A V S D S S D R S K D K
 
AT5G06960.1     M D Q K T L R R L A Q N R E A A R K S R L R K K A Y V Q Q L E N S R L K L T Q L E Q E L Q R A R Q Q G V F I S S S G D Q
gm036516_Glyma1    S D Q K T L R R L A Q N R E A A R K S R L R K K A Y V Q Q L E S S R L K L T Q L E Q E L Q R A R Q Q G I F I S S S G D Q
 
AT5G06960.1     A H S T A G D G A M A F D V E Y R R W Q E D K N R Q M K E L S S A I D S H A T D S E L R I I V D G V I A H Y E E L Y R I
gm036516_Glyma1    A H T L S G N G A M Q F D A E Y A R W L E E Q N R Q I N E L R A A V N S H A S D T E L R M I V D G I L A H Y D E I F R L
 
AT5G06960.1     K G N A A K S D V F H L L S G M W K T P A E R C F L W L G G F R S S E L L K L I A S Q L E P L T E Q Q S L D I N N L Q Q
gm036516_Glyma1    K G V A A K A D V F H L L S G M W K T P A E R C F L W L G G F R S S E L L K L L V S Q L E P L T E Q Q L M G I T N L Q Q
 
AT5G06960.1     S S Q Q A E D A L S Q G M D N L Q Q S L A D T L S S G T L G S S - S S G N V A S Y M G Q M A M A M G K L G T L E G F I R
gm036516_Glyma1    S S Q Q A E D A L S Q G M E A L Q Q S L A E T L S T G A P A S S G S S G N V A S Y M G Q M A M A M G K L G T L E G F I Q
 
AT5G06960.1     Q A D N L R L Q T Y Q Q M V R L L T T R Q S A R A L L A V H N Y T L R L R A L S S L W L A R P R E
gm036516_Glyma1    Q A D N L R Q Q T L Q Q M H R I L T T R Q S A R A L L A I H D Y I S R L R A L S S L W L A R P R D
 
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