fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G08190.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp028834 not found in 155aa AT5G08190.2 1st_not 0.702439024 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G08190.1     MDPMDIVG-KSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESN
pp028834_Pp1s28 ---MDTAGSRPKDDVSLPKATMTKIIKEMLPPDVRVAKDAQDLLVECCVEFINLISSESN
                   ** .* :.*:*.****************.*****:******:***************

AT5G08190.1     EVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQ---RSVKMNSGA
pp028834_Pp1s28 EICSKDEKRTIAPEHVLRALEILGFGEYIGEVQAAYEQHKNESLESPKVGGRWAKEGGGG
                *:*.*::**********:**::******: ** ******* *:::..:   * .* ..*.

AT5G08190.1     EMTEEEAAAEQQRMFAEARARMN-GGVTVPQPEQLEEPQQQQQTSLQS
pp028834_Pp1s28 GMTEEEAIAAQQRMFAEARARMNSGGAAAPAAQANDSD----------
                 ****** * ************* **.:.* .:  :.
BoxShade v3.31 C (beta, 970507) Output
AT5G08190.1     M D P M D I V G - K S K E D A S L P K A T M T K I I K E M L P A D V R V A R D A Q D L L I E C C V E F I N L I S S E S N
pp028834_Pp1s28    - - - M D T A G S R P K D D V S L P K A T M T K I I K E M L P P D V R V A K D A Q D L L V E C C V E F I N L I S S E S N
 
AT5G08190.1     E V C N K E D K R T I A P E H V L K A L Q V L G F G E Y V E E V Y A A Y E Q H K Y E T M Q D S Q - - - R S V K M N S G A
pp028834_Pp1s28    E I C S K D E K R T I A P E H V L R A L E I L G F G E Y I G E V Q A A Y E Q H K N E S L E S P K V G G R W A K E G G G G
 
AT5G08190.1     E M T E E E A A A E Q Q R M F A E A R A R M N - G G V T V P Q P E Q L E E P Q Q Q Q Q T S L Q S
pp028834_Pp1s28    G M T E E E A I A A Q Q R M F A E A R A R M N S G G A A A P A A Q A N D S D - - - - - - - - - -
 
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