fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G08190.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp003478 not found in 166aa AT5G23090.1 not_not 0.673170731 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G08190.1     MDPMDI-VGKSKEDASLPK------------ATMTKIIKEMLPADVRVARDAQDLLIECC
pp003478_Pp1s18 ---MDTAAGRPKDDVSLPKDGGLHTFIHLRAATMTKIIKEMLPPDVRVAKDAQDLLVECC
                   **  .*:.*:*.****            ************.*****:******:***

AT5G08190.1     VEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQ
pp003478_Pp1s18 VEFINLISSESNEICSKEEKRTIAPEHVLRALEILGFGEYMGEVQGAFEQHKNETLESPK
                *************:*.**:**********:**::******: ** .*:**** **::..:

AT5G08190.1     ---RSVKMNSGAEMTEEEAAAEQQRMFAEARARMNGGVTVPQPEQLEEPQQQQQTSLQS
pp003478_Pp1s18 VGGRWAK-EGGGGMTEEEAIAAQQRMFAEARARMNSA-GAPAPS-----AQANDSS---
                   * .* :.*. ****** * *************..  .* *.      * :::*
BoxShade v3.31 C (beta, 970507) Output
AT5G08190.1     M D P M D I - V G K S K E D A S L P K - - - - - - - - - - - - A T M T K I I K E M L P A D V R V A R D A Q D L L I E C C
pp003478_Pp1s18    - - - M D T A A G R P K D D V S L P K D G G L H T F I H L R A A T M T K I I K E M L P P D V R V A K D A Q D L L V E C C
 
AT5G08190.1     V E F I N L I S S E S N E V C N K E D K R T I A P E H V L K A L Q V L G F G E Y V E E V Y A A Y E Q H K Y E T M Q D S Q
pp003478_Pp1s18    V E F I N L I S S E S N E I C S K E E K R T I A P E H V L R A L E I L G F G E Y M G E V Q G A F E Q H K N E T L E S P K
 
AT5G08190.1     - - - R S V K M N S G A E M T E E E A A A E Q Q R M F A E A R A R M N G G V T V P Q P E Q L E E P Q Q Q Q Q T S L Q S
pp003478_Pp1s18    V G G R W A K - E G G G G M T E E E A I A A Q Q R M F A E A R A R M N S A - G A P A P S - - - - - A Q A N D S S - - -
 
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