fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G08190.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt027186 not found in 156aa AT5G23090.1 1st_not 0.873170731 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G08190.1     MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE
pt027186_POPTR_ MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
                *:****************************.**********************:******

AT5G08190.1     VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTE
pt027186_POPTR_ VCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMHDSLKGGKWSNGAAMTE
                **.:***************:*******:*********** ***:** :. * ..** ***

AT5G08190.1     EEAAAEQQRMFAEARARMNGGVTVPQPEQLEEPQQQQQTSLQS
pt027186_POPTR_ EEAAAAQQRMFDEARARMNGGVTAPK-----QPETNQ--SLKS
                ***** ***** ***********.*:     :*: :*  **:*
BoxShade v3.31 C (beta, 970507) Output
AT5G08190.1     M D P M D I V G K S K E D A S L P K A T M T K I I K E M L P A D V R V A R D A Q D L L I E C C V E F I N L I S S E S N E
pt027186_POPTR_    M E P M D I V G K S K E D A S L P K A T M T K I I K E M L P P D V R V A R D A Q D L L I E C C V E F I N L V S S E S N E
 
AT5G08190.1     V C N K E D K R T I A P E H V L K A L Q V L G F G E Y V E E V Y A A Y E Q H K Y E T M Q D S Q R S V K M N S G A E M T E
pt027186_POPTR_    V C S R E D K R T I A P E H V L K A L E V L G F G E Y I E E V Y A A Y E Q H K L E T M H D S L K G G K W S N G A A M T E
 
AT5G08190.1     E E A A A E Q Q R M F A E A R A R M N G G V T V P Q P E Q L E E P Q Q Q Q Q T S L Q S
pt027186_POPTR_    E E A A A A Q Q R M F D E A R A R M N G G V T A P K - - - - - Q P E T N Q - - S L K S
 
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