fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G08190.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm046870 not found in 160aa AT5G23090.1 1st_not 0.882926829 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G08190.1     MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE
gm046870_Glyma1 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
                *:****************************.**********************:******

AT5G08190.1     VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQR----SVKMNSGA
gm046870_Glyma1 VCNREDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKLETMQDSLRGGGGGGKWNNGA
                ***:***********************:*********** ****** *    . * *.**

AT5G08190.1     EMTEEEAAAEQQRMFAEARARMNGGVTVPQPEQLEEPQQQQQTSLQS
gm046870_Glyma1 EMTEEEALAEQQRMFAEARARMNGGAIASK-----QPDADQ--SLDS
                ******* *****************. ..:     :*: :*  **:*
BoxShade v3.31 C (beta, 970507) Output
AT5G08190.1     M D P M D I V G K S K E D A S L P K A T M T K I I K E M L P A D V R V A R D A Q D L L I E C C V E F I N L I S S E S N E
gm046870_Glyma1    M E P M D I V G K S K E D A S L P K A T M T K I I K E M L P P D V R V A R D A Q D L L I E C C V E F I N L V S S E S N E
 
AT5G08190.1     V C N K E D K R T I A P E H V L K A L Q V L G F G E Y V E E V Y A A Y E Q H K Y E T M Q D S Q R - - - - S V K M N S G A
gm046870_Glyma1    V C N R E D K R T I A P E H V L K A L Q V L G F G E Y I E E V Y A A Y E Q H K L E T M Q D S L R G G G G G G K W N N G A
 
AT5G08190.1     E M T E E E A A A E Q Q R M F A E A R A R M N G G V T V P Q P E Q L E E P Q Q Q Q Q T S L Q S
gm046870_Glyma1    E M T E E E A L A E Q Q R M F A E A R A R M N G G A I A S K - - - - - Q P D A D Q - - S L D S
 
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