fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G08330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt000871 not found in 272aa AT5G23280.1 1st_not 0.465454545 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G08330.1     MADNDGAVSNGIIVEQTSNKGPLN-----------AVKKPPSKDRHSKVDGRGRRIRMPI
pt000871_POPTR_ MSDNSGAVNNGALIDPQRNQPPGGGGGGGATNGALAVKKPPSKDRHSKVDGRGRRIRMPI
                *:**.***.** :::   *: * .           *************************

AT5G08330.1     ICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLSTS------
pt000871_POPTR_ ICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGGNSN
                ************************************************.*:*.       

AT5G08330.1     ------------------------SPFTLGKRVVRAEEGESGGGGGGGLTVGHTMGTSLM
pt000871_POPTR_ SISSLSSNNVHSAASLDHKPLLGPAPFILGKR-MRPEEDGNGGKDDGGVPVGPTIG-SLM
                                        :** **** :*.**. .** ..**:.** *:* ***

AT5G08330.1     G-----GGGSGGFWAVPARPDFGQVWSFATGAPPEMVF---AQQQQPATLFVRHQQQQQA
pt000871_POPTR_ GPTATAAAGSGGFWALPARADF---WGFA-AAPPEMVVQPTAVQQ--SSLFM-HQQH---
                *     ..*******:***.**   *.** .******.   * **  ::**: ***:   

AT5G08330.1     SAAAAAAMGEASAARVGNYLPGHHLNLLASLSGGANGSGRREDDHEPR
pt000871_POPTR_ -AAAAAAMGEASAARLGNYLPG-HLNLLASLSGGSGSSGRREEDQR--
                 **************:****** ***********:..*****:*:.
BoxShade v3.31 C (beta, 970507) Output
AT5G08330.1     M A D N D G A V S N G I I V E Q T S N K G P L N - - - - - - - - - - - A V K K P P S K D R H S K V D G R G R R I R M P I
pt000871_POPTR_    M S D N S G A V N N G A L I D P Q R N Q P P G G G G G G G A T N G A L A V K K P P S K D R H S K V D G R G R R I R M P I
 
AT5G08330.1     I C A A R V F Q L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G T G T T P A S F S T A S L S T S - - - - - -
pt000871_POPTR_    I C A A R V F Q L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G T G T T P A S F S T V S V S V R A G G N S N
 
AT5G08330.1     - - - - - - - - - - - - - - - - - - - - - - - - S P F T L G K R V V R A E E G E S G G G G G G G L T V G H T M G T S L M
pt000871_POPTR_    S I S S L S S N N V H S A A S L D H K P L L G P A P F I L G K R - M R P E E D G N G G K D D G G V P V G P T I G - S L M
 
AT5G08330.1     G - - - - - G G G S G G F W A V P A R P D F G Q V W S F A T G A P P E M V F - - - A Q Q Q Q P A T L F V R H Q Q Q Q Q A
pt000871_POPTR_    G P T A T A A A G S G G F W A L P A R A D F - - - W G F A - A A P P E M V V Q P T A V Q Q - - S S L F M - H Q Q H - - -
 
AT5G08330.1     S A A A A A A M G E A S A A R V G N Y L P G H H L N L L A S L S G G A N G S G R R E D D H E P R
pt000871_POPTR_    - A A A A A A M G E A S A A R L G N Y L P G - H L N L L A S L S G G S G S S G R R E E D Q R - -
 
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