fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G08330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm054250 not found in 242aa AT5G23280.1 1st_not 0.523636363 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G08330.1     MADNDGAVSNGIIVE----QTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVF
gm054250_Glyma2 MSNSDGT-TNGAITEAQRQQQQQGGKALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVF
                *::.**: :** *.*    * .: *   ********************************

AT5G08330.1     QLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLSTSS------------
gm054250_Glyma2 QLTRELGHKSDGQTIEWLLRQAEPSVIAATGTGTIPASFSSVSLSSPSSTSDYKPQLLAP
                *************************:******** *****:.***:.*            

AT5G08330.1     -PFTLGKRVVRAEEGESGGGGGGGLTVGHTMGTSLMGGGGSGGFWAVPARPDFGQVWSF-
gm054250_Glyma2 TPFILGKR-IRTDEDSSKDE-------AVSVGPSLVGPYAPPGPGVVPAWPDFGQIWSFV
                 ** **** :*::*..* .        . ::*.**:*  .. *  .*** *****:*** 

AT5G08330.1     ATGAPPEMVFA--QQQQPATLFVRHQQQQQASAAAAAAMGEASAARVGNYLPGHHLNLLA
gm054250_Glyma2 AAAAAPEMVSVPQQQQQQASLFAHHHRQQQ-----QLAIGEALAARVGNYLPG-HLNLLA
                *:.*.**** .  **** *:**.:*::***       *:*** ********** ******

AT5G08330.1     SLSGGANGSGRREDDHEPR
gm054250_Glyma2 SLSGGPGNSGRRDD--EPR
                *****...****:*  ***
BoxShade v3.31 C (beta, 970507) Output
AT5G08330.1     M A D N D G A V S N G I I V E - - - - Q T S N K G P L N A V K K P P S K D R H S K V D G R G R R I R M P I I C A A R V F
gm054250_Glyma2    M S N S D G T - T N G A I T E A Q R Q Q Q Q Q G G K A L A V K K P P S K D R H S K V D G R G R R I R M P I I C A A R V F
 
AT5G08330.1     Q L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G T G T T P A S F S T A S L S T S S - - - - - - - - - - - -
gm054250_Glyma2    Q L T R E L G H K S D G Q T I E W L L R Q A E P S V I A A T G T G T I P A S F S S V S L S S P S S T S D Y K P Q L L A P
 
AT5G08330.1     - P F T L G K R V V R A E E G E S G G G G G G G L T V G H T M G T S L M G G G G S G G F W A V P A R P D F G Q V W S F -
gm054250_Glyma2    T P F I L G K R - I R T D E D S S K D E - - - - - - - A V S V G P S L V G P Y A P P G P G V V P A W P D F G Q I W S F V
 
AT5G08330.1     A T G A P P E M V F A - - Q Q Q Q P A T L F V R H Q Q Q Q Q A S A A A A A A M G E A S A A R V G N Y L P G H H L N L L A
gm054250_Glyma2    A A A A A P E M V S V P Q Q Q Q Q Q A S L F A H H H R Q Q Q - - - - - Q L A I G E A L A A R V G N Y L P G - H L N L L A
 
AT5G08330.1     S L S G G A N G S G R R E D D H E P R
gm054250_Glyma2    S L S G G P G N S G R R D D - - E P R
 
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