fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G08330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm026307 not found in 208aa AT5G23280.1 not_not 0.48 III
Gm029164 not found in 246aa AT5G23280.1 not_not 0.432727272 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G08330.1     MADNDGAV---SNGIIVEQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQ
gm026307_Glyma0 MSNSDGATNA--------------------KPPSKDRHSKVDGRGRRIRMPIICAARVFQ
gm029164_Glyma1 MSNSDATTNGVSNGAIIDAQRQQAL--AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQ
                *::.*.:.                      ******************************

AT5G08330.1     LTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLS----------------
gm026307_Glyma0 LTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTV-----------------SD
gm029164_Glyma1 LTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSSVSLSVRAAANSLSSPSSTSD
                ******************************:********:.                   

AT5G08330.1     ------TSSPFTLGKRVVRAEEGESGGGGGGGLTVGHTMGTSLMGGGGSGGFWAVPARPD
gm026307_Glyma0 HKPLLPPPTPFILGKRIRPDDDSAAKDDAV-----------SLVAPPTPPALWALPPRPD
gm029164_Glyma1 HKPQLLSPTPFILGKRIRTDEDS-SKDEAVS-------VGPSLVGPSTPPGLWALPARPD
                      ..:** ****:   ::. : . .            **:.   . .:**:*.***

AT5G08330.1     FGQVWSFATGAPPEMVFAQQQQPATLFVRH-----QQQQQASAAAAAAMGEASAARVGNY
gm026307_Glyma0 FGQVWSF--AAAPELVSVSPQN--SMFHHHHQHHQQQQQQ------AAMGEASAARLGNY
gm029164_Glyma1 FGQIWSFAAAAAPEMVSVSQQQQASLFAHHH----RQQQQ------QAIGEASAARVGNY
                ***:***  .*.**:* .. *:  ::* :*     :****       *:*******:***

AT5G08330.1     LPGHHLNLLASLSGGANGSGRREDDHEPR
gm026307_Glyma0 LPG-HLNLLASLSGGHGNSGRRDD--EPR
gm029164_Glyma1 LPG-HLNLLASLSGGPGNSGRRDD--EPR
                *** *********** ..****:*  ***
BoxShade v3.31 C (beta, 970507) Output
AT5G08330.1     M A D N D G A V - - - S N G I I V E Q T S N K G P L N A V K K P P S K D R H S K V D G R G R R I R M P I I C A A R V F Q
gm026307_Glyma0    M S N S D G A T N A - - - - - - - - - - - - - - - - - - - - K P P S K D R H S K V D G R G R R I R M P I I C A A R V F Q
gm029164_Glyma1    M S N S D A T T N G V S N G A I I D A Q R Q Q A L - - A V K K P P S K D R H S K V D G R G R R I R M P I I C A A R V F Q
 
AT5G08330.1     L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G T G T T P A S F S T A S L S - - - - - - - - - - - - - - - -
gm026307_Glyma0    L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G S G T T P A S F S T V - - - - - - - - - - - - - - - - - S D
gm029164_Glyma1    L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G S G T T P A S F S S V S L S V R A A A N S L S S P S S T S D
 
AT5G08330.1     - - - - - - T S S P F T L G K R V V R A E E G E S G G G G G G G L T V G H T M G T S L M G G G G S G G F W A V P A R P D
gm026307_Glyma0    H K P L L P P P T P F I L G K R I R P D D D S A A K D D A V - - - - - - - - - - - S L V A P P T P P A L W A L P P R P D
gm029164_Glyma1    H K P Q L L S P T P F I L G K R I R T D E D S - S K D E A V S - - - - - - - V G P S L V G P S T P P G L W A L P A R P D
 
AT5G08330.1     F G Q V W S F A T G A P P E M V F A Q Q Q Q P A T L F V R H - - - - - Q Q Q Q Q A S A A A A A A M G E A S A A R V G N Y
gm026307_Glyma0    F G Q V W S F - - A A A P E L V S V S P Q N - - S M F H H H H Q H H Q Q Q Q Q Q - - - - - - A A M G E A S A A R L G N Y
gm029164_Glyma1    F G Q I W S F A A A A A P E M V S V S Q Q Q Q A S L F A H H H - - - - R Q Q Q Q - - - - - - Q A I G E A S A A R V G N Y
 
AT5G08330.1     L P G H H L N L L A S L S G G A N G S G R R E D D H E P R
gm026307_Glyma0    L P G - H L N L L A S L S G G H G N S G R R D D - - E P R
gm029164_Glyma1    L P G - H L N L L A S L S G G P G N S G R R D D - - E P R
 
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