fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G08330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm054250 not found in 242aa AT5G23280.1 1st_not 0.523636363 II
Gm026307 not found in 208aa AT5G23280.1 not_not 0.48 III
Gm029164 not found in 246aa AT5G23280.1 not_not 0.432727272 III
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Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G08330.1     MADNDGAV---SNGIIVEQTSNK----GPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAA
gm026307_Glyma0 MSNSDGATNA------------------------KPPSKDRHSKVDGRGRRIRMPIICAA
gm054250_Glyma2 MSNSDGTT----NGAITEAQRQQQQQGGKALAVKKPPSKDRHSKVDGRGRRIRMPIICAA
gm029164_Glyma1 MSNSDATTNGVSNGAIIDAQRQQ------ALAVKKPPSKDRHSKVDGRGRRIRMPIICAA
                *::.*.:.                          **************************

AT5G08330.1     RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTA---------SLSTSS
gm026307_Glyma0 RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTV---------------
gm054250_Glyma2 RVFQLTRELGHKSDGQTIEWLLRQAEPSVIAATGTGTIPASFSSV---------SLSSPS
gm029164_Glyma1 RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSSVSLSVRAAANSLSSPS
                ****************************:*****:** *****:.               

AT5G08330.1     -------------PFTLGKRVVRAEEGESGGGGGGGLTVGHTMGTSLMGGGGSGGFWAVP
gm026307_Glyma0 --SDHKPLLPPPTPFILGKRIRPDDDSAAKDDAV-----------SLVAPPTPPALWALP
gm054250_Glyma2 STSDYKPQLLAPTPFILGKRIRTDEDS-SKDEAVS-------VGPSLVGPYAPPGPGVVP
gm029164_Glyma1 STSDHKPQLLSPTPFILGKRIRTDEDS-SKDEAVS-------VGPSLVGPSTPPGLWALP
                             ** ****:   ::. : . .            **:.   . .  .:*

AT5G08330.1     ARPDFGQVWSF-ATGAPPEMVFA--QQQQPATLFVRH-----QQQQQASAAAAAAMGEAS
gm026307_Glyma0 PRPDFGQVWSF---AAAPELVSV----SPQNSMFHHHHQHHQQQQQQ------AAMGEAS
gm054250_Glyma2 AWPDFGQIWSFVAAAAAPEMVSVPQQQQQQASLFAHHH----RQQQQ------LAIGEAL
gm029164_Glyma1 ARPDFGQIWSF-AAAAAPEMVSV--SQQQQASLFAHHH----RQQQQ------QAIGEAS
                . *****:***   .*.**:* .    .   ::* :*     :****       *:*** 

AT5G08330.1     AARVGNYLPGHHLNLLASLSGGANGSGRREDDHEPR
gm026307_Glyma0 AARLGNYLPG-HLNLLASLSGGHGNSGRRDD--EPR
gm054250_Glyma2 AARVGNYLPG-HLNLLASLSGGPGNSGRRDD--EPR
gm029164_Glyma1 AARVGNYLPG-HLNLLASLSGGPGNSGRRDD--EPR
                ***:****** *********** ..****:*  ***
BoxShade v3.31 C (beta, 970507) Output
AT5G08330.1     M A D N D G A V - - - S N G I I V E Q T S N K - - - - G P L N A V K K P P S K D R H S K V D G R G R R I R M P I I C A A
gm026307_Glyma0    M S N S D G A T N A - - - - - - - - - - - - - - - - - - - - - - - - K P P S K D R H S K V D G R G R R I R M P I I C A A
gm054250_Glyma2    M S N S D G T T - - - - N G A I T E A Q R Q Q Q Q Q G G K A L A V K K P P S K D R H S K V D G R G R R I R M P I I C A A
gm029164_Glyma1    M S N S D A T T N G V S N G A I I D A Q R Q Q - - - - - - A L A V K K P P S K D R H S K V D G R G R R I R M P I I C A A
 
AT5G08330.1     R V F Q L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G T G T T P A S F S T A - - - - - - - - - S L S T S S
gm026307_Glyma0    R V F Q L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G S G T T P A S F S T V - - - - - - - - - - - - - - -
gm054250_Glyma2    R V F Q L T R E L G H K S D G Q T I E W L L R Q A E P S V I A A T G T G T I P A S F S S V - - - - - - - - - S L S S P S
gm029164_Glyma1    R V F Q L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G S G T T P A S F S S V S L S V R A A A N S L S S P S
 
AT5G08330.1     - - - - - - - - - - - - - P F T L G K R V V R A E E G E S G G G G G G G L T V G H T M G T S L M G G G G S G G F W A V P
gm026307_Glyma0    - - S D H K P L L P P P T P F I L G K R I R P D D D S A A K D D A V - - - - - - - - - - - S L V A P P T P P A L W A L P
gm054250_Glyma2    S T S D Y K P Q L L A P T P F I L G K R I R T D E D S - S K D E A V S - - - - - - - V G P S L V G P Y A P P G P G V V P
gm029164_Glyma1    S T S D H K P Q L L S P T P F I L G K R I R T D E D S - S K D E A V S - - - - - - - V G P S L V G P S T P P G L W A L P
 
AT5G08330.1     A R P D F G Q V W S F - A T G A P P E M V F A - - Q Q Q Q P A T L F V R H - - - - - Q Q Q Q Q A S A A A A A A M G E A S
gm026307_Glyma0    P R P D F G Q V W S F - - - A A A P E L V S V - - - - S P Q N S M F H H H H Q H H Q Q Q Q Q Q - - - - - - A A M G E A S
gm054250_Glyma2    A W P D F G Q I W S F V A A A A A P E M V S V P Q Q Q Q Q Q A S L F A H H H - - - - R Q Q Q Q - - - - - - L A I G E A L
gm029164_Glyma1    A R P D F G Q I W S F - A A A A A P E M V S V - - S Q Q Q Q A S L F A H H H - - - - R Q Q Q Q - - - - - - Q A I G E A S
 
AT5G08330.1     A A R V G N Y L P G H H L N L L A S L S G G A N G S G R R E D D H E P R
gm026307_Glyma0    A A R L G N Y L P G - H L N L L A S L S G G H G N S G R R D D - - E P R
gm054250_Glyma2    A A R V G N Y L P G - H L N L L A S L S G G P G N S G R R D D - - E P R
gm029164_Glyma1    A A R V G N Y L P G - H L N L L A S L S G G P G N S G R R D D - - E P R
 
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