fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G10280.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt001093 not found in 341aa AT1G34670.1 1st_not 0.486739469 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G10280.1     MGRSPISDDSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNY
pt001093_POPTR_ MGRSPCCDESGLKKGPWTPEEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY
                ***** .*:**********:**:***:*:*****.*************************

AT5G10280.1     LRPDIKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKKLIQMG
pt001093_POPTR_ LRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMG
                ********:** :**********:******:**.:*************************

AT5G10280.1     FDPMTHRPRTDIFSGLSQLMSLSSNLRGFVDLQQQFPIDQEHTILKLQTE---MAKLQLF
pt001093_POPTR_ FDPMTHRPRTDIFSSLPHLIAL-ANLKELIDHHSL----EEHA-LRLQTEAAQMAKLQYL
                **************.*.:*::* :**: ::* :.     :**: *:****   ***** :

AT5G10280.1     QYLLQP--------SSMSNNVNP----NDFDTLSLLNSIASFKETSNNTTSNNLDLGFLG
pt001093_POPTR_ QYLLQPQPPAASNNATSSNNLNNISAIGEMEAFNLLNSLASFKDSPVSSLS-QFDLS--A
                ******        :: ***:*     .:::::.****:****::. .: * ::**.  .

AT5G10280.1     SYLQD------FHSLPSLKT-LNSNMEPSS-VFPQNLDDNHFKFSTQRENLPVSPIWLSD
pt001093_POPTR_ SSLQGINDLMPFSHLPDLQIPCNYQTPPNKDVFDQAPELTVF---SQGENSPNSPWQL--
                * **.      *  **.*:   * :  *.. ** *  : . *   :* ** * **  *  

AT5G10280.1     PSSTTPAHVNDDLIFNQYGIEDVNSNITSSSGQESGAS-----ASAAWPDHLLDDSIFSD
pt001093_POPTR_ PSSSTPSPPSVFPLVPQ------NSGMVNNLGDASSTSSYVGEAPSVWHD-ILENPLFHD
                ***:**:  .   :. *      **.:... *: *.:*     *.:.* * :*::.:* *

AT5G10280.1     IP
pt001093_POPTR_ IA
                *.
BoxShade v3.31 C (beta, 970507) Output
AT5G10280.1     M G R S P I S D D S G L K K G P W T P D E D E K L V N Y V Q K H G H S S W R A L P K L A G L N R C G K S C R L R W T N Y
pt001093_POPTR_    M G R S P C C D E S G L K K G P W T P E E D Q K L V K Y I Q K H G H G S W R A L P K L A G L N R C G K S C R L R W T N Y
 
AT5G10280.1     L R P D I K R G R F S P D E E Q T I L N L H S V L G N K W S T I A N Q L P G R T D N E I K N F W N T H L K K K L I Q M G
pt001093_POPTR_    L R P D I K R G K F S Q E E E Q T I L N L H S I L G N K W S A I A G H L P G R T D N E I K N F W N T H L K K K L I Q M G
 
AT5G10280.1     F D P M T H R P R T D I F S G L S Q L M S L S S N L R G F V D L Q Q Q F P I D Q E H T I L K L Q T E - - - M A K L Q L F
pt001093_POPTR_    F D P M T H R P R T D I F S S L P H L I A L - A N L K E L I D H H S L - - - - E E H A - L R L Q T E A A Q M A K L Q Y L
 
AT5G10280.1     Q Y L L Q P - - - - - - - - S S M S N N V N P - - - - N D F D T L S L L N S I A S F K E T S N N T T S N N L D L G F L G
pt001093_POPTR_    Q Y L L Q P Q P P A A S N N A T S S N N L N N I S A I G E M E A F N L L N S L A S F K D S P V S S L S - Q F D L S - - A
 
AT5G10280.1     S Y L Q D - - - - - - F H S L P S L K T - L N S N M E P S S - V F P Q N L D D N H F K F S T Q R E N L P V S P I W L S D
pt001093_POPTR_    S S L Q G I N D L M P F S H L P D L Q I P C N Y Q T P P N K D V F D Q A P E L T V F - - - S Q G E N S P N S P W Q L - -
 
AT5G10280.1     P S S T T P A H V N D D L I F N Q Y G I E D V N S N I T S S S G Q E S G A S - - - - - A S A A W P D H L L D D S I F S D
pt001093_POPTR_    P S S S T P S P P S V F P L V P Q - - - - - - N S G M V N N L G D A S S T S S Y V G E A P S V W H D - I L E N P L F H D
 
AT5G10280.1     I P
pt001093_POPTR_    I A
 
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