fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G12840.3 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm023267 not found in 336aa AT5G12840.4 1st_not 0.475 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G12840.3     MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNG-S
gm023267_Glyma0 MQSKSETANRLR-SDPHSFQPGGVYSEPWWRGIGYNPMAQTMAGANASNSSSLECPNGDS
                ****.   *. . .: *:.*   :*:****:. .:. :.*: ... .******:**** *

AT5G12840.3     ESNDVHSASEDGALNGENDGTWKDSQAA----TSSRSVDNHGMEGNDPALSIRNMHDQPL
gm023267_Glyma0 ESNEEGQSLSNSGMNEEDDDATKDSKPAAPNETGNYEQEQQGMQHT--ASSPPSMREECL
                ***:  .: .:..:* *:*.: ***:.*    *.. . :::**: .  * *  .*::: *

AT5G12840.3     VQPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEP
gm023267_Glyma0 TQTPQLELVGHSIACSTNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEP
                .*.*  ***** *** .**********:*.********: *::***: * .***:*****

AT5G12840.3     VYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEV
gm023267_Glyma0 VYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDG
                ********:******:**********:*:.**********:*******.:*******:: 

AT5G12840.3     EAGEDAGGRDRERGS----ATNSSGSEQVETDSNETLNSSG----------------AP-
gm023267_Glyma0 E-GSNHLGKEKDNGTDSVQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNSRFEAPS
                * *.:  *::::.*:    : .***** :.:** ** **..                ** 

AT5G12840.3     ----------------------------------------
gm023267_Glyma0 YQNGSGSYHNHNGLQSSVYHSSSGERVEERDCSGQQLNHN
BoxShade v3.31 C (beta, 970507) Output
AT5G12840.3     M Q S K P G R E N E E E V N N H H A V Q Q P M M Y A E P W W K N N S F G V V P Q A R P S G I P S N S S S L D C P N G - S
gm023267_Glyma0    M Q S K S E T A N R L R - S D P H S F Q P G G V Y S E P W W R G I G Y N P M A Q T M A G A N A S N S S S L E C P N G D S
 
AT5G12840.3     E S N D V H S A S E D G A L N G E N D G T W K D S Q A A - - - - T S S R S V D N H G M E G N D P A L S I R N M H D Q P L
gm023267_Glyma0    E S N E E G Q S L S N S G M N E E D D D A T K D S K P A A P N E T G N Y E Q E Q Q G M Q H T - - A S S P P S M R E E C L
 
AT5G12840.3     V Q P P - - E L V G H Y I A C V P N P Y Q D P Y Y G G L M G A Y G H Q Q L G F R P Y L G M P R E R T A L P L D M A Q E P
gm023267_Glyma0    T Q T P Q L E L V G H S I A C S T N P Y Q D P Y Y G G M M A A Y G H Q Q L G Y A P F I G M P H A R M P L P L E M A Q E P
 
AT5G12840.3     V Y V N A K Q Y E G I L R R R K A R A K A E L E R K V I R D R K P Y L H E S R H K H A M R R A R A S G G R F A K K S E V
gm023267_Glyma0    V Y V N A K Q Y Q G I L R R R Q A R A K A E L E R K L I K S R K P Y L H E S R H Q H A M R R A R G T G G R F A K K T D G
 
AT5G12840.3     E A G E D A G G R D R E R G S - - - - A T N S S G S E Q V E T D S N E T L N S S G - - - - - - - - - - - - - - - - A P -
gm023267_Glyma0    E - G S N H L G K E K D N G T D S V Q S I S S S G S E P L H S D S A E T W N S P N M Q Q D A R A S K V H N S R F E A P S
 
AT5G12840.3     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm023267_Glyma0    Y Q N G S G S Y H N H N G L Q S S V Y H S S S G E R V E E R D C S G Q Q L N H N
 
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