fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G12840.3 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm048890 not found in 354aa AT5G12840.4 not_not 0.44375 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G12840.3     ----------MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNS
gm048890_Glyma1 MKVVSVGSEDMQSKSETANRLR-SDPHSFQPGSVYSEPWWRGIGYNPVAQTMAGANASNS
                          ****.   *. . .: *:.*   :*:****:. .:. *.*: ... .***

AT5G12840.3     SSLDCPNG-SESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRN
gm048890_Glyma1 SSLECPNGDSESN------EEGNYGQEQQGMQHTASSAPS--------------------
                ***:**** ****      *:*  . *::*  : :.:*.*                    

AT5G12840.3     MHDQPLVQPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPL
gm048890_Glyma1 MREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPL
                *::: *.*.*  ***** ***..**********:*.********: *::***: * .***

AT5G12840.3     DMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF
gm048890_Glyma1 EMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRF
                :*************:******:**********:*:.**********:*******.:****

AT5G12840.3     AKKSEVEAGEDAGGRDRERGS-------ATNSSGSEQVETDSNETLNSSGAP--------
gm048890_Glyma1 AKKTDGE-GSNHSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARASKC
                ***:: * *.: .*::::.*:       : .***** :.:** ** **..          

AT5G12840.3     ------------------------------------------------------------
gm048890_Glyma1 TIHPQVKDWRKGIVRRPRLVCIQVTYLVNTLVICKHSWQYICQAANHSWLCSCVCGVNDY
                                                                            

AT5G12840.3     ----------------------
gm048890_Glyma1 YGGGWGGGGMIDARLSLKVVSS
BoxShade v3.31 C (beta, 970507) Output
AT5G12840.3     - - - - - - - - - - M Q S K P G R E N E E E V N N H H A V Q Q P M M Y A E P W W K N N S F G V V P Q A R P S G I P S N S
gm048890_Glyma1    M K V V S V G S E D M Q S K S E T A N R L R - S D P H S F Q P G S V Y S E P W W R G I G Y N P V A Q T M A G A N A S N S
 
AT5G12840.3     S S L D C P N G - S E S N D V H S A S E D G A L N G E N D G T W K D S Q A A T S S R S V D N H G M E G N D P A L S I R N
gm048890_Glyma1    S S L E C P N G D S E S N - - - - - - E E G N Y G Q E Q Q G M Q H T A S S A P S - - - - - - - - - - - - - - - - - - - -
 
AT5G12840.3     M H D Q P L V Q P P - - E L V G H Y I A C V P N P Y Q D P Y Y G G L M G A Y G H Q Q L G F R P Y L G M P R E R T A L P L
gm048890_Glyma1    M R E E C L T Q T P Q L E L V G H S I A C A T N P Y Q D P Y Y G G M M A A Y G H Q Q L G Y A P F I G M P H A R M P L P L
 
AT5G12840.3     D M A Q E P V Y V N A K Q Y E G I L R R R K A R A K A E L E R K V I R D R K P Y L H E S R H K H A M R R A R A S G G R F
gm048890_Glyma1    E M A Q E P V Y V N A K Q Y Q G I L R R R Q A R A K A E L E R K L I K S R K P Y L H E S R H Q H A M R R A R G T G G R F
 
AT5G12840.3     A K K S E V E A G E D A G G R D R E R G S - - - - - - - A T N S S G S E Q V E T D S N E T L N S S G A P - - - - - - - -
gm048890_Glyma1    A K K T D G E - G S N H S G K E K D N G T D S V L S S Q S I S S S G S E P L H S D S A E T W N S P N M Q Q D A R A S K C
 
AT5G12840.3     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm048890_Glyma1    T I H P Q V K D W R K G I V R R P R L V C I Q V T Y L V N T L V I C K H S W Q Y I C Q A A N H S W L C S C V C G V N D Y
 
AT5G12840.3     - - - - - - - - - - - - - - - - - - - - - -
gm048890_Glyma1    Y G G G W G G G G M I D A R L S L K V V S S
 
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