fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G12840.3 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm023267 not found in 336aa AT5G12840.4 1st_not 0.475 II
Gm048890 not found in 354aa AT5G12840.4 not_not 0.44375 III
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G12840.3     ----------MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNS
gm048890_Glyma1 MKVVSVGSEDMQSKSETANRLR-SDPHSFQPGSVYSEPWWRGIGYNPVAQTMAGANASNS
gm023267_Glyma0 ----------MQSKSETANRLR-SDPHSFQPGGVYSEPWWRGIGYNPMAQTMAGANASNS
                          ****.   *. . .: *:.*   :*:****:. .:. :.*: ... .***

AT5G12840.3     SSLDCPNG-SESNDVHSASEDGALNGENDGTWKDSQAA----TSSRSVDNHGMEGNDPAL
gm048890_Glyma1 SSLECPNGDSESNEE----------------------------GNYGQEQQGMQHT--AS
gm023267_Glyma0 SSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSKPAAPNETGNYEQEQQGMQHT--AS
                ***:**** ****:                             ..   :::**: .  * 

AT5G12840.3     SIRNMHDQPLVQPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERT
gm048890_Glyma1 SAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARM
gm023267_Glyma0 SPPSMREECLTQTPQLELVGHSIACSTNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARM
                *  .*::: *.*.*  ***** *** .**********:*.********: *::***: * 

AT5G12840.3     ALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARAS
gm048890_Glyma1 PLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGT
gm023267_Glyma0 PLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGT
                .***:*************:******:**********:*:.**********:*******.:

AT5G12840.3     GGRFAKKSEVEAGEDAGGRDRERG-------SATNSSGSEQVETDSNETLNS--------
gm048890_Glyma1 GGRFAKKTDGE-GSNHSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDAR
gm023267_Glyma0 GGRFAKKTDGE-GSNHLGKEKDNGTDSV---QSISSSGSEPLHSDSAETWNSPNMQQDAR
                *******:: * *.:  *::::.*       .: .***** :.:** ** **        

AT5G12840.3     ------------------------------------------------------------
gm048890_Glyma1 ASKCTIHP---QVKDWRKGIVRRPRLVCIQVTYLVNTLVICKHSWQYICQAANHSWLCSC
gm023267_Glyma0 ASK--VHNSRFEAPSYQNG------------------------SGSY----HNHNGLQSS
                                                                            

AT5G12840.3     ------------SGAP---------------
gm048890_Glyma1 VCGVNDYYGGGWGGGGMIDAR-LSLKVVSS-
gm023267_Glyma0 V-----YHS---SSGERVEERDCSGQQLNHN
                            ...
BoxShade v3.31 C (beta, 970507) Output
AT5G12840.3     - - - - - - - - - - M Q S K P G R E N E E E V N N H H A V Q Q P M M Y A E P W W K N N S F G V V P Q A R P S G I P S N S
gm048890_Glyma1    M K V V S V G S E D M Q S K S E T A N R L R - S D P H S F Q P G S V Y S E P W W R G I G Y N P V A Q T M A G A N A S N S
gm023267_Glyma0    - - - - - - - - - - M Q S K S E T A N R L R - S D P H S F Q P G G V Y S E P W W R G I G Y N P M A Q T M A G A N A S N S
 
AT5G12840.3     S S L D C P N G - S E S N D V H S A S E D G A L N G E N D G T W K D S Q A A - - - - T S S R S V D N H G M E G N D P A L
gm048890_Glyma1    S S L E C P N G D S E S N E E - - - - - - - - - - - - - - - - - - - - - - - - - - - - G N Y G Q E Q Q G M Q H T - - A S
gm023267_Glyma0    S S L E C P N G D S E S N E E G Q S L S N S G M N E E D D D A T K D S K P A A P N E T G N Y E Q E Q Q G M Q H T - - A S
 
AT5G12840.3     S I R N M H D Q P L V Q P P - - E L V G H Y I A C V P N P Y Q D P Y Y G G L M G A Y G H Q Q L G F R P Y L G M P R E R T
gm048890_Glyma1    S A P S M R E E C L T Q T P Q L E L V G H S I A C A T N P Y Q D P Y Y G G M M A A Y G H Q Q L G Y A P F I G M P H A R M
gm023267_Glyma0    S P P S M R E E C L T Q T P Q L E L V G H S I A C S T N P Y Q D P Y Y G G M M A A Y G H Q Q L G Y A P F I G M P H A R M
 
AT5G12840.3     A L P L D M A Q E P V Y V N A K Q Y E G I L R R R K A R A K A E L E R K V I R D R K P Y L H E S R H K H A M R R A R A S
gm048890_Glyma1    P L P L E M A Q E P V Y V N A K Q Y Q G I L R R R Q A R A K A E L E R K L I K S R K P Y L H E S R H Q H A M R R A R G T
gm023267_Glyma0    P L P L E M A Q E P V Y V N A K Q Y Q G I L R R R Q A R A K A E L E R K L I K S R K P Y L H E S R H Q H A M R R A R G T
 
AT5G12840.3     G G R F A K K S E V E A G E D A G G R D R E R G - - - - - - - S A T N S S G S E Q V E T D S N E T L N S - - - - - - - -
gm048890_Glyma1    G G R F A K K T D G E - G S N H S G K E K D N G T D S V L S S Q S I S S S G S E P L H S D S A E T W N S P N M Q Q D A R
gm023267_Glyma0    G G R F A K K T D G E - G S N H L G K E K D N G T D S V - - - Q S I S S S G S E P L H S D S A E T W N S P N M Q Q D A R
 
AT5G12840.3     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm048890_Glyma1    A S K C T I H P - - - Q V K D W R K G I V R R P R L V C I Q V T Y L V N T L V I C K H S W Q Y I C Q A A N H S W L C S C
gm023267_Glyma0    A S K - - V H N S R F E A P S Y Q N G - - - - - - - - - - - - - - - - - - - - - - - - S G S Y - - - - H N H N G L Q S S
 
AT5G12840.3     - - - - - - - - - - - - S G A P - - - - - - - - - - - - - - -
gm048890_Glyma1    V C G V N D Y Y G G G W G G G G M I D A R - L S L K V V S S -
gm023267_Glyma0    V - - - - - Y H S - - - S S G E R V E E R D C S G Q Q L N H N
 
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