fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G13080.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt027916 not found in 186aa AT5G13080.1 not_1st 0.653992395 II
Pt010645 not found in 157aa AT5G13080.1 not_1st 0.638783269 II
Pt023442 not found in 186aa AT5G13080.1 not_1st 0.600760456 II
Pt026972 not found in 178aa AT5G13080.1 not_1st 0.581749049 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G13080.1     ------------------------------------MEGYDNGSLYAPFLSLKSHSK---
pt026972_POPTR_ MPMEKYQIFLPVSGPSSPSVSPSSLNMAN-PLIY--FHGDSENG-------VKPESRFQH
pt023442_POPTR_ MQMEKYQIFLPVSDPSSPSGSPSSLNMAN-PLIY--FHGENENG-------VRPESRTQH
pt010645_POPTR_ ----------------------MSLNMIN-SYASTDFEGTRGNG----LLGLMQEMQAPA
pt027916_POPTR_ --MEKFQMLFPFSSTGSPN-YPVSSSMTNSSHVFHNFQADSSGG----FLGLKTETQHPV
                                                    :..   ..       :  . :   

AT5G13080.1     ----PELHQGEEESSKVRSEGCSKSVESSKKKGKKQ-----RYAFQTRSQVDILDDGYRW
pt026972_POPTR_ ----LDAKSSVSQTSRI-CNGSEFKVKPGKRGGDSDDFRKHRYAFQTRSQVDILDDGYRW
pt023442_POPTR_ ----SDAKHSDPQTSRV-SSNSEIKVKPGVRGGDNNEFRKHKYAFQTRSQVDILDDGYRW
pt010645_POPTR_ -----SLNFDDISQNRG-FVGSGIEGKLGKNKGEKK-IRKPKYAFQTRSRVDILDDGYRW
pt027916_POPTR_ PRTSPEINKDLNSQSASCAIGSETEPQAAKKKGEKK-IRKPKYAFQTRSQVDILDDGYRW
                     . : .  . .     ..  . : . . *...     :*******:**********

AT5G13080.1     RKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHPIEKSTENF
pt026972_POPTR_ RKYGQKTVKSSKFPRSYYRCTSTGCNVKKQVQRNSKDEGIVVTTYEGMHNHPTERSSENF
pt023442_POPTR_ RKYGQKTVKNSKFPRSYYRCTNNGCNVKKQVQRNSKDEEIVVTTYEGMHTHPIEKCTDNI
pt010645_POPTR_ RKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHQIEKSPDNF
pt027916_POPTR_ RKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTKDEGVVVTTYEGMHTHPIEKPNDNF
                ******:**..**********  ********** : *: :*******:*.*  *:  :*:

AT5G13080.1     EHILTQMQIYS-SF--------
pt026972_POPTR_ EDILRQIQTYT-PF--------
pt023442_POPTR_ EDILRQMQTYT-PFEIMPGHFL
pt010645_POPTR_ EHILSQMQIYS-----------
pt027916_POPTR_ EHILSQMQIYSTPF--------
                *.** *:* *:
BoxShade v3.31 C (beta, 970507) Output
AT5G13080.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E G Y D N G S L Y A P F L S L K S H S K - - -
pt026972_POPTR_    M P M E K Y Q I F L P V S G P S S P S V S P S S L N M A N - P L I Y - - F H G D S E N G - - - - - - - V K P E S R F Q H
pt023442_POPTR_    M Q M E K Y Q I F L P V S D P S S P S G S P S S L N M A N - P L I Y - - F H G E N E N G - - - - - - - V R P E S R T Q H
pt010645_POPTR_    - - - - - - - - - - - - - - - - - - - - - - M S L N M I N - S Y A S T D F E G T R G N G - - - - L L G L M Q E M Q A P A
pt027916_POPTR_    - - M E K F Q M L F P F S S T G S P N - Y P V S S S M T N S S H V F H N F Q A D S S G G - - - - F L G L K T E T Q H P V
 
AT5G13080.1     - - - - P E L H Q G E E E S S K V R S E G C S K S V E S S K K K G K K Q - - - - - R Y A F Q T R S Q V D I L D D G Y R W
pt026972_POPTR_    - - - - L D A K S S V S Q T S R I - C N G S E F K V K P G K R G G D S D D F R K H R Y A F Q T R S Q V D I L D D G Y R W
pt023442_POPTR_    - - - - S D A K H S D P Q T S R V - S S N S E I K V K P G V R G G D N N E F R K H K Y A F Q T R S Q V D I L D D G Y R W
pt010645_POPTR_    - - - - - S L N F D D I S Q N R G - F V G S G I E G K L G K N K G E K K - I R K P K Y A F Q T R S R V D I L D D G Y R W
pt027916_POPTR_    P R T S P E I N K D L N S Q S A S C A I G S E T E P Q A A K K K G E K K - I R K P K Y A F Q T R S Q V D I L D D G Y R W
 
AT5G13080.1     R K Y G Q K A V K N N K F P R S Y Y R C T Y G G C N V K K Q V Q R L T V D Q E V V V T T Y E G V H S H P I E K S T E N F
pt026972_POPTR_    R K Y G Q K T V K S S K F P R S Y Y R C T S T G C N V K K Q V Q R N S K D E G I V V T T Y E G M H N H P T E R S S E N F
pt023442_POPTR_    R K Y G Q K T V K N S K F P R S Y Y R C T N N G C N V K K Q V Q R N S K D E E I V V T T Y E G M H T H P I E K C T D N I
pt010645_POPTR_    R K Y G Q K A V K N N K F P R S Y Y R C T H Q G C N V K K Q V Q R L T K D E G V V V T T Y E G M H S H Q I E K S P D N F
pt027916_POPTR_    R K Y G Q K A V K N N K F P R S Y Y R C T Y Q G C N V K K Q V Q R L T K D E G V V V T T Y E G M H T H P I E K P N D N F
 
AT5G13080.1     E H I L T Q M Q I Y S - S F - - - - - - - -
pt026972_POPTR_    E D I L R Q I Q T Y T - P F - - - - - - - -
pt023442_POPTR_    E D I L R Q M Q T Y T - P F E I M P G H F L
pt010645_POPTR_    E H I L S Q M Q I Y S - - - - - - - - - - -
pt027916_POPTR_    E H I L S Q M Q I Y S T P F - - - - - - - -
 
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