fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G13080.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm051620 not found in 188aa AT5G13080.1 1st_1st 0.669201520 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G13080.1     MEGY------DNGSLYA----------------PFLSLKSHSK-----PELHQGEEESSK
gm051620_Glyma1 MENYSMLFSVSNSSSYPIGVGSSQIGYSGQSSNAFLGLRPSNELASDDHEKRQGGGDGNM
                **.*      .*.* *.                .**.*:. .:      * :**  :.. 

AT5G13080.1     VRSE------------GCSKSVESSKKKGKKQ----RYAFQTRSQVDILDDGYRWRKYGQ
gm051620_Glyma1 LMSQISGGSINVSDELGGSGNSNNNKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQ
                : *:            * * . :..****:*:    ************************

AT5G13080.1     KAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHPIEKSTENFEHILT
gm051620_Glyma1 KAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILS
                ****************: ************ *: **********:*****:*:******:

AT5G13080.1     QMQIYSSF
gm051620_Glyma1 QMQIYTPF
                *****:.*
BoxShade v3.31 C (beta, 970507) Output
AT5G13080.1     M E G Y - - - - - - D N G S L Y A - - - - - - - - - - - - - - - - P F L S L K S H S K - - - - - P E L H Q G E E E S S K
gm051620_Glyma1    M E N Y S M L F S V S N S S S Y P I G V G S S Q I G Y S G Q S S N A F L G L R P S N E L A S D D H E K R Q G G G D G N M
 
AT5G13080.1     V R S E - - - - - - - - - - - - G C S K S V E S S K K K G K K Q - - - - R Y A F Q T R S Q V D I L D D G Y R W R K Y G Q
gm051620_Glyma1    L M S Q I S G G S I N V S D E L G G S G N S N N N K K K G E K K V R K P R Y A F Q T R S Q V D I L D D G Y R W R K Y G Q
 
AT5G13080.1     K A V K N N K F P R S Y Y R C T Y G G C N V K K Q V Q R L T V D Q E V V V T T Y E G V H S H P I E K S T E N F E H I L T
gm051620_Glyma1    K A V K N N K F P R S Y Y R C T H Q G C N V K K Q V Q R L T K D E G V V V T T Y E G V H T H P I E K T T D N F E H I L S
 
AT5G13080.1     Q M Q I Y S S F
gm051620_Glyma1    Q M Q I Y T P F
 
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