fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G13180.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm023501 not found in 224aa AT5G13180.1 1st_1st 0.686567164 Ia
Pt029735 not found in 257aa AT5G13180.1 1st_1st 0.733830845 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G13180.1     MDNVKLVKNGVLRLPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFDVCRADPWDLP
gm023501_Glyma0 MEKVNFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPASIIPELHVCKSDPWDLP
pt029735_POPTR_ MEKLSFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDLP
                *:::.:**** *****************:******* :.*********..**::******

AT5G13180.1     GNLEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRG-NQIVGLKKTLVFY
gm023501_Glyma0 GDLEQERYFFSTKVAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNNQVVGMKKTLVFY
pt029735_POPTR_ GDLEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTSKG-HQVVGMKKTLVFY
                *:**:*******: *************.********:**::***:* :*:**:*******

AT5G13180.1     KGKPPHGSRTDWIMHEYRLSSSPPSS--------------MGPTQNWVLCRIFLKKRAGN
gm023501_Glyma0 RGKPPNGSRTDWIMHEYRL----------ILNASQSQSH-VVPMENWVLCRIFLKRRIGA
pt029735_POPTR_ RGKPPHGTRTDWIMHEYRLASTETTACNTLKNKNSTQGPVVVPMENWVLCRIFLKKR-GT
                :****:*:***********                     : * :**********:* * 

AT5G13180.1     KNDDDDGDSRNLRHNNNNNSSDQIEIITTDQTDDKTKPIFFDFMRKERTTDLNLLPSSPS
gm023501_Glyma0 KN----GEESNSKV------------------------VFYDFLAQNKT-------DSSS
pt029735_POPTR_ KN-----EEENIQVGNDNRLPKL----------RATEPVFYDFMTKEKTTDLNLAPSSSS
                **     :. * :                         :*:**: :::*       .*.*

AT5G13180.1     SDHASSGVTTEIF-SSSD--EETSSCNSFR-------
gm023501_Glyma0 S--VASGIT-----HESDEHEESSSSNTFPYTIRRKP
pt029735_POPTR_ S--GSSGITEEVSCNESDDHEESSSCNSFPY-VRRKP
                *   :**:*      .**  **:**.*:*
BoxShade v3.31 C (beta, 970507) Output
AT5G13180.1     M D N V K L V K N G V L R L P P G F R F H P T D E E L V V Q Y L K R K V C S S P L P A S I I P E F D V C R A D P W D L P
gm023501_Glyma0    M E K V N F V K N G E L R L P P G F R F H P T D E E L V L Q Y L K R K V F S C P L P A S I I P E L H V C K S D P W D L P
pt029735_POPTR_    M E K L S F V K N G V L R L P P G F R F H P T D E E L V V Q Y L K R K V F A C P L P A S I I P E V D V C K S D P W D L P
 
AT5G13180.1     G N L E K E R Y F F S T R E A K Y P N G N R S N R A T G S G Y W K A T G I D K R V V T S R G - N Q I V G L K K T L V F Y
gm023501_Glyma0    G D L E Q E R Y F F S T K V A K Y P N G N R S N R A T N S G Y W K A T G L D K Q I V T S K G N N Q V V G M K K T L V F Y
pt029735_POPTR_    G D L E Q E R Y F F S T R E A K Y P N G N R S N R A T G S G Y W K A T G I D K Q I V T S K G - H Q V V G M K K T L V F Y
 
AT5G13180.1     K G K P P H G S R T D W I M H E Y R L S S S P P S S - - - - - - - - - - - - - - M G P T Q N W V L C R I F L K K R A G N
gm023501_Glyma0    R G K P P N G S R T D W I M H E Y R L - - - - - - - - - - I L N A S Q S Q S H - V V P M E N W V L C R I F L K R R I G A
pt029735_POPTR_    R G K P P H G T R T D W I M H E Y R L A S T E T T A C N T L K N K N S T Q G P V V V P M E N W V L C R I F L K K R - G T
 
AT5G13180.1     K N D D D D G D S R N L R H N N N N N S S D Q I E I I T T D Q T D D K T K P I F F D F M R K E R T T D L N L L P S S P S
gm023501_Glyma0    K N - - - - G E E S N S K V - - - - - - - - - - - - - - - - - - - - - - - - V F Y D F L A Q N K T - - - - - - - D S S S
pt029735_POPTR_    K N - - - - - E E E N I Q V G N D N R L P K L - - - - - - - - - - R A T E P V F Y D F M T K E K T T D L N L A P S S S S
 
AT5G13180.1     S D H A S S G V T T E I F - S S S D - - E E T S S C N S F R - - - - - - -
gm023501_Glyma0    S - - V A S G I T - - - - - H E S D E H E E S S S S N T F P Y T I R R K P
pt029735_POPTR_    S - - G S S G I T E E V S C N E S D D H E E S S S C N S F P Y - V R R K P
 
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