fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G13330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm050581 not found in 242aa AT5G61890.1 1st_not 0.470588235 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G13330.1     ---MVSALSRVI----ENPTDP-----PVKQELDKSDQHQ-------PDQDQPRRRHYRG
gm050581_Glyma1 MSEMVSALAQVMGTTNRNPYMPQSTSFPFSTSVVK-DQPQPYPSQPPPDQEVAKKPHYRG
                   *****::*:    .**  *     *.. .: * ** *       ***: .:: ****

AT5G13330.1     VRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQG-
gm050581_Glyma1 VRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHQD
                *******************************:******:******************:  

AT5G13330.1     -----------------PTTTTTISHAPRGVSESMNSPPPRPGPPSTTTTS------WPM
gm050581_Glyma1 VPFMQQHQQRSSNRNVFPIHATSTTSSATGSVSSVDA----VAPPSLSTHDQHGHQVFPN
                                 *  :*: : :. *  .*:::     .*** :* .      :* 

AT5G13330.1     TYNQDILQYAQLLTSNNEVDLSYYTSTLFS--------QPFSTPSSSSSSSQQT----QQ
gm050581_Glyma1 LY-----QYAQILSS-DDAQLPYFTSHLFNQQQQQQQQQPFNSQFSSTFSSTSSYFYNQQ
                 *     ****:*:* ::.:*.*:** **.        ***.:  **: ** .:    **

AT5G13330.1     QQLQQQQQQREEEEKNYGYNYYNYPRE
gm050581_Glyma1 QQYDQQ-----------GHDHSNH---
                ** :**           *::: *:
BoxShade v3.31 C (beta, 970507) Output
AT5G13330.1     - - - M V S A L S R V I - - - - E N P T D P - - - - - P V K Q E L D K S D Q H Q - - - - - - - P D Q D Q P R R R H Y R G
gm050581_Glyma1    M S E M V S A L A Q V M G T T N R N P Y M P Q S T S F P F S T S V V K - D Q P Q P Y P S Q P P P D Q E V A K K P H Y R G
 
AT5G13330.1     V R Q R P W G K W A A E I R D P K K A A R V W L G T F E T A E E A A L A Y D R A A L K F K G T K A K L N F P E R V Q G -
gm050581_Glyma1    V R Q R P W G K W A A E I R D P K K A A R V W L G T F E T A E D A A L A Y D K A A L K F K G T K A K L N F P E R V H Q D
 
AT5G13330.1     - - - - - - - - - - - - - - - - - P T T T T T I S H A P R G V S E S M N S P P P R P G P P S T T T T S - - - - - - W P M
gm050581_Glyma1    V P F M Q Q H Q Q R S S N R N V F P I H A T S T T S S A T G S V S S V D A - - - - V A P P S L S T H D Q H G H Q V F P N
 
AT5G13330.1     T Y N Q D I L Q Y A Q L L T S N N E V D L S Y Y T S T L F S - - - - - - - - Q P F S T P S S S S S S S Q Q T - - - - Q Q
gm050581_Glyma1    L Y - - - - - Q Y A Q I L S S - D D A Q L P Y F T S H L F N Q Q Q Q Q Q Q Q Q P F N S Q F S S T F S S T S S Y F Y N Q Q
 
AT5G13330.1     Q Q L Q Q Q Q Q Q R E E E E K N Y G Y N Y Y N Y P R E
gm050581_Glyma1    Q Q Y D Q Q - - - - - - - - - - - G H D H S N H - - -
 
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