fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G15160.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os011458 not found in 91aa AT1G26945.1 1st_not 0.586666666 II
Sb002496 not found in 86aa AT3G28857.1 1st_not 0.56 II
Gm051002 not found in 91aa AT1G26945.1 1st_not 0.733333333 II
Pt004762 not found in 90aa AT5G39860.1 1st_not 0.72 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G15160.1     MSSSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNL
Sb002496_Sorbi1 -MSS------GRRGRISDDEINELISKLQALLPESSRRRNASRSSASKLLKETCAYIKSL
pt004762_POPTR_ -MSSRRPRQSSVP-RITDDQIIDLVSKLRQLLPEISQ-RRSDKVSASKVLQETCNYIRNL
gm051002_Glyma1 -MSSRRSRQQSASTRISDDQIIDLVSKLRQLVPEIRD-RRSDKVSASKVLQETCNYIRSL
Os011458_Os03t0 -MSSRRG-GGGGGGRITDEEINELISKLQALLPESSRSRGASRSSASKLLKETCSYIKSL
                  **      .   **:*::* :*:***:  :**    * :.  ****:*:*** **:.*

AT5G15160.1     NKEADDLSDRLTQLLESIDPNSPQAAVIRSLING
Sb002496_Sorbi1 HREVDDLSERLSGLMSTMDNDSPQAEIIRSLLR-
pt004762_POPTR_ HREVDDLSERLSQLLATIDADSPEAAIIRSLIM-
gm051002_Glyma1 HREVDDLSERLSQLLATIDADSPEAAIIRSLIN-
Os011458_Os03t0 HREVDDLSDRLSELMSTMDNNSPQAEIIRSLLR-
                ::*.****:**: *: ::* :**:* :****:
BoxShade v3.31 C (beta, 970507) Output
AT5G15160.1     M S S S R R S R Q A S S S S R I S D D Q I T D L I S K L R Q S I P E I R Q N R R S N T V S A S K V L Q E T C N Y I R N L
Sb002496_Sorbi1    - M S S - - - - - - G R R G R I S D D E I N E L I S K L Q A L L P E S S R R R N A S R S S A S K L L K E T C A Y I K S L
pt004762_POPTR_    - M S S R R P R Q S S V P - R I T D D Q I I D L V S K L R Q L L P E I S Q - R R S D K V S A S K V L Q E T C N Y I R N L
gm051002_Glyma1    - M S S R R S R Q Q S A S T R I S D D Q I I D L V S K L R Q L V P E I R D - R R S D K V S A S K V L Q E T C N Y I R S L
Os011458_Os03t0    - M S S R R G - G G G G G G R I T D E E I N E L I S K L Q A L L P E S S R S R G A S R S S A S K L L K E T C S Y I K S L
 
AT5G15160.1     N K E A D D L S D R L T Q L L E S I D P N S P Q A A V I R S L I N G
Sb002496_Sorbi1    H R E V D D L S E R L S G L M S T M D N D S P Q A E I I R S L L R -
pt004762_POPTR_    H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I M -
gm051002_Glyma1    H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I N -
Os011458_Os03t0    H R E V D D L S D R L S E L M S T M D N N S P Q A E I I R S L L R -
 
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