fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G15160.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt019267 not found in 90aa AT5G39860.1 not_not 0.7 III
Pt023817 not found in 91aa AT1G74500.1 not_not 0.606666666 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G15160.1     MSSSR-RSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRN
pt023817_POPTR_ MSSRRSRSRQ-SSSSRISDDQILDLVTKLQQLLPEIR-NRRSDKVSAAKILQETCNYIKS
pt019267_POPTR_ MSSR--RSRQ-SSVPRITDDQIIHLVSKLRQLLPEIR-QRRSDKVSASKVLQETCNYIKN
                ***   **** ** .**:**** .*::**:* :**** :***:.***:*:********:.

AT5G15160.1     LNKEADDLSDRLTQLLESIDPNSPQAAVIRSLING
pt023817_POPTR_ LHREVGDLSERLSELLET--TDTAQAAIIRNLLMQ
pt019267_POPTR_ LHREVDDLSERLSQLLATIDSDSPEAEIIRSLIM-
                *::*..***:**::** :  .::.:* :**.*:
BoxShade v3.31 C (beta, 970507) Output
AT5G15160.1     M S S S R - R S R Q A S S S S R I S D D Q I T D L I S K L R Q S I P E I R Q N R R S N T V S A S K V L Q E T C N Y I R N
pt023817_POPTR_    M S S R R S R S R Q - S S S S R I S D D Q I L D L V T K L Q Q L L P E I R - N R R S D K V S A A K I L Q E T C N Y I K S
pt019267_POPTR_    M S S R - - R S R Q - S S V P R I T D D Q I I H L V S K L R Q L L P E I R - Q R R S D K V S A S K V L Q E T C N Y I K N
 
AT5G15160.1     L N K E A D D L S D R L T Q L L E S I D P N S P Q A A V I R S L I N G
pt023817_POPTR_    L H R E V G D L S E R L S E L L E T - - T D T A Q A A I I R N L L M Q
pt019267_POPTR_    L H R E V D D L S E R L S Q L L A T I D S D S P E A E I I R S L I M -
 
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