fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G15160.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os011454 not found in 92aa AT1G26945.1 not_not 0.573333333 III
Os035852 not found in 88aa AT1G26945.1 not_not 0.526666666 III
Os009859 not found in 88aa AT1G26945.1 not_not 0.526666666 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G15160.1     MSSSR-RSRQASSSSRISDDQITDLISKLRQSIP-EIRQNRR-SNTVSASKVLQETCNYI
Os009859_Os02t0 MSSRR------SSRGSISEEEINELISKLQSLLP-NSRR-RG-SSQASTTKLLKETCNYI
Os035852_Os10t0 MSGRR------AS-GRITDDEINELISKLQSLLPESSRR-RGATSRSPATKLLKEMCSYI
Os011454_Os03t0 MSSRRSRSRQ-SGSSRITDEQISDLVSKLQDLLP-EARL-RS-NDRVPSSRVLQETCNYI
                **. *      :. . *::::*.:*:***:. :* . *  *  ..  .::::*:* *.**

AT5G15160.1     RNLNKEADDLSDRLTQLLESIDPNSPQAAVIRSLING
Os009859_Os02t0 KSLHREVDDLSDRLSDLMATMDHNSPGAEIIRSILRS
Os035852_Os10t0 KSLHREVDDLSERLSELMATMDSNSPQADIIRSLLR-
Os011454_Os03t0 RSLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM-
                :.*::*.****:**::*: : * .*. * :***::
BoxShade v3.31 C (beta, 970507) Output
AT5G15160.1     M S S S R - R S R Q A S S S S R I S D D Q I T D L I S K L R Q S I P - E I R Q N R R - S N T V S A S K V L Q E T C N Y I
Os009859_Os02t0    M S S R R - - - - - - S S R G S I S E E E I N E L I S K L Q S L L P - N S R R - R G - S S Q A S T T K L L K E T C N Y I
Os035852_Os10t0    M S G R R - - - - - - A S - G R I T D D E I N E L I S K L Q S L L P E S S R R - R G A T S R S P A T K L L K E M C S Y I
Os011454_Os03t0    M S S R R S R S R Q - S G S S R I T D E Q I S D L V S K L Q D L L P - E A R L - R S - N D R V P S S R V L Q E T C N Y I
 
AT5G15160.1     R N L N K E A D D L S D R L T Q L L E S I D P N S P Q A A V I R S L I N G
Os009859_Os02t0    K S L H R E V D D L S D R L S D L M A T M D H N S P G A E I I R S I L R S
Os035852_Os10t0    K S L H R E V D D L S E R L S E L M A T M D S N S P Q A D I I R S L L R -
Os011454_Os03t0    R S L H Q E V D D L S E R L S E L L A T S D M S S A Q A A I I R S L L M -
 
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