fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G15160.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os011458 not found in 91aa AT1G26945.1 1st_not 0.586666666 II
Os011454 not found in 92aa AT1G26945.1 not_not 0.573333333 III
Os035852 not found in 88aa AT1G26945.1 not_not 0.526666666 III
Os009859 not found in 88aa AT1G26945.1 not_not 0.526666666 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G15160.1     MSSSRRSR-QASSSSRISDDQITDLISKLRQSIPEIRQNRRS-NTVSASKVLQETCNYIR
Os009859_Os02t0 -MSSRR-----SSRGSISEEEINELISKLQSLLP-NSRRRGS-SQASTTKLLKETCNYIK
Os011458_Os03t0 -MSSRRG--GGGGGGRITDEEINELISKLQALLPESSRSRGA-SRSSASKLLKETCSYIK
Os011454_Os03t0 -MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLP-EARLRSN-DRVPSSRVLQETCNYIR
Os035852_Os10t0 -MSGRR------ASGRITDDEINELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIK
                  *.**      . . *::::*.:*:***:  :*   : *   .  .::::*:* *.**:

AT5G15160.1     NLNKEADDLSDRLTQLLESIDPNSPQAAVIRSLING
Os009859_Os02t0 SLHREVDDLSDRLSDLMATMDHNSPGAEIIRSILRS
Os011458_Os03t0 SLHREVDDLSDRLSELMSTMDNNSPQAEIIRSLLR-
Os011454_Os03t0 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM-
Os035852_Os10t0 SLHREVDDLSERLSELMATMDSNSPQADIIRSLLR-
                .*::*.****:**::*: : * .*. * :***::
BoxShade v3.31 C (beta, 970507) Output
AT5G15160.1     M S S S R R S R - Q A S S S S R I S D D Q I T D L I S K L R Q S I P E I R Q N R R S - N T V S A S K V L Q E T C N Y I R
Os009859_Os02t0    - M S S R R - - - - - S S R G S I S E E E I N E L I S K L Q S L L P - N S R R R G S - S Q A S T T K L L K E T C N Y I K
Os011458_Os03t0    - M S S R R G - - G G G G G G R I T D E E I N E L I S K L Q A L L P E S S R S R G A - S R S S A S K L L K E T C S Y I K
Os011454_Os03t0    - M S S R R S R S R Q S G S S R I T D E Q I S D L V S K L Q D L L P - E A R L R S N - D R V P S S R V L Q E T C N Y I R
Os035852_Os10t0    - M S G R R - - - - - - A S G R I T D D E I N E L I S K L Q S L L P E S S R R R G A T S R S P A T K L L K E M C S Y I K
 
AT5G15160.1     N L N K E A D D L S D R L T Q L L E S I D P N S P Q A A V I R S L I N G
Os009859_Os02t0    S L H R E V D D L S D R L S D L M A T M D H N S P G A E I I R S I L R S
Os011458_Os03t0    S L H R E V D D L S D R L S E L M S T M D N N S P Q A E I I R S L L R -
Os011454_Os03t0    S L H Q E V D D L S E R L S E L L A T S D M S S A Q A A I I R S L L M -
Os035852_Os10t0    S L H R E V D D L S E R L S E L M A T M D S N S P Q A D I I R S L L R -
 
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