fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G15160.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb002496 not found in 86aa AT3G28857.1 1st_not 0.56 II
Sb022206 not found in 213aa AT1G26945.1 not_not 0.546666666 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G15160.1     ----------------------------------------MSSSR-RSRQASSSSRISDD
Sb022206_Sorbi1 LPFHHLCISNLLASLLTSQFVSRSLAKLLSPISQTTTSTKMSSRRSRSRQ-SGSSRITEE
Sb002496_Sorbi1 ----------------------------------------MSSGR--------RGRISDD
                                                        *** *         .**:::

AT5G15160.1     QITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESID
Sb022206_Sorbi1 QISDLVSKLQDLLPEARLQSNA-RVPSARVLQETCNYIRSLHQEVDDLSERLSELLATSD
Sb002496_Sorbi1 EINELISKLQALLPESSRRRNASRSSASKLLKETCAYIKSLHREVDDLSERLSGLMSTMD
                :*.:*:***:  :**   . .:   .::::*:*** **:.*::*.****:**: *: : *

AT5G15160.1     PNSPQAAVIRSLING
Sb022206_Sorbi1 MSSAQAAVIRSLLM-
Sb002496_Sorbi1 NDSPQAEIIRSLLR-
                 .*.** :****:
BoxShade v3.31 C (beta, 970507) Output
AT5G15160.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S S R - R S R Q A S S S S R I S D D
Sb022206_Sorbi1    L P F H H L C I S N L L A S L L T S Q F V S R S L A K L L S P I S Q T T T S T K M S S R R S R S R Q - S G S S R I T E E
Sb002496_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S G R - - - - - - - - R G R I S D D
 
AT5G15160.1     Q I T D L I S K L R Q S I P E I R Q N R R S N T V S A S K V L Q E T C N Y I R N L N K E A D D L S D R L T Q L L E S I D
Sb022206_Sorbi1    Q I S D L V S K L Q D L L P E A R L Q S N A - R V P S A R V L Q E T C N Y I R S L H Q E V D D L S E R L S E L L A T S D
Sb002496_Sorbi1    E I N E L I S K L Q A L L P E S S R R R N A S R S S A S K L L K E T C A Y I K S L H R E V D D L S E R L S G L M S T M D
 
AT5G15160.1     P N S P Q A A V I R S L I N G
Sb022206_Sorbi1    M S S A Q A A V I R S L L M -
Sb002496_Sorbi1    N D S P Q A E I I R S L L R -
 
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