fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G15830.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm035172 not found in 214aa AT3G30530.1 1st_not 0.421818181 II
Pt019238 not found in 196aa AT3G30530.1 1st_not 0.454545454 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G15830.1     MQPNYDSSSLN-----------------NMQQQD--YFNLNNYYNNLNPSTNNNNLNILQ
gm035172_Glyma1 MQTKEVVSSLSYLLPSNPCSYPPSNNYTSMIQNSIPTFQFQRFSNQIYGCNNSHN-TTYQ
pt019238_POPTR_ MQPNE-IAGLHYLVPPN--SSPYSAHF-SMTQDNSQMFQFNQFTNQSY---------NFQ
                **.:   :.*                  .* *:.   *:::.: *:             *

AT5G15830.1     YP-QIQELNLQSPVSNNSTTSDDATEE-IFVINERKQRRMVSNRESARRSRMRKQRHLDE
gm035172_Glyma1 VP----DFSPQSSCISSNSTSDEADDQNLSLINERKHRRMLSNRESARRSRMRKQKHLDE
pt019238_POPTR_ IPPQLQEFSLQASCMSSHSTSDEADEQQLSLINERKQRRMISNRESARRSRMRKQKHLDE
                 *    ::. *:.  .. :***:* :: : :*****:***:**************:****

AT5G15830.1     LLSQVAWLRSENHQLLDKLNQVSDNNDLVIQENSSLKEENLELRQVITSMKKLGGGIHDK
gm035172_Glyma1 LWSQVVWLRNENHQLIDKLNHVSETHDQVLQENSQLKEEASELRQMIRDMQ-----IHSP
pt019238_POPTR_ LWSQVVWLRNENHQLVDKVNHVSECHDQVVQENNQLKEEISELRQVLTDMQ-----LSSP
                * ***.***.*****:**:*:**: :* *:***..****  ****:: .*:     : . 

AT5G15830.1     YSSPSS----MDELDQD---FSSITDDPRTHH-PS---------
gm035172_Glyma1 CGGPNSFITPLEDHDVDHVPSAYLRSDDSSNQFNSCNNNMDLLG
pt019238_POPTR_ Y--PS--LKGLEDITCD---TAYLRA-ESSNQ--SITSSSDLLG
                   *.     :::   *    : :     :::  *
BoxShade v3.31 C (beta, 970507) Output
AT5G15830.1     M Q P N Y D S S S L N - - - - - - - - - - - - - - - - - N M Q Q Q D - - Y F N L N N Y Y N N L N P S T N N N N L N I L Q
gm035172_Glyma1    M Q T K E V V S S L S Y L L P S N P C S Y P P S N N Y T S M I Q N S I P T F Q F Q R F S N Q I Y G C N N S H N - T T Y Q
pt019238_POPTR_    M Q P N E - I A G L H Y L V P P N - - S S P Y S A H F - S M T Q D N S Q M F Q F N Q F T N Q S Y - - - - - - - - - N F Q
 
AT5G15830.1     Y P - Q I Q E L N L Q S P V S N N S T T S D D A T E E - I F V I N E R K Q R R M V S N R E S A R R S R M R K Q R H L D E
gm035172_Glyma1    V P - - - - D F S P Q S S C I S S N S T S D E A D D Q N L S L I N E R K H R R M L S N R E S A R R S R M R K Q K H L D E
pt019238_POPTR_    I P P Q L Q E F S L Q A S C M S S H S T S D E A D E Q Q L S L I N E R K Q R R M I S N R E S A R R S R M R K Q K H L D E
 
AT5G15830.1     L L S Q V A W L R S E N H Q L L D K L N Q V S D N N D L V I Q E N S S L K E E N L E L R Q V I T S M K K L G G G I H D K
gm035172_Glyma1    L W S Q V V W L R N E N H Q L I D K L N H V S E T H D Q V L Q E N S Q L K E E A S E L R Q M I R D M Q - - - - - I H S P
pt019238_POPTR_    L W S Q V V W L R N E N H Q L V D K V N H V S E C H D Q V V Q E N N Q L K E E I S E L R Q V L T D M Q - - - - - L S S P
 
AT5G15830.1     Y S S P S S - - - - M D E L D Q D - - - F S S I T D D P R T H H - P S - - - - - - - - -
gm035172_Glyma1    C G G P N S F I T P L E D H D V D H V P S A Y L R S D D S S N Q F N S C N N N M D L L G
pt019238_POPTR_    Y - - P S - - L K G L E D I T C D - - - T A Y L R A - E S S N Q - - S I T S S S D L L G
 
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