fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G16470.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp024916 not found in 105aa AT3G02790.1 1st_not 0.706422018 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G16470.1     MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK
pp024916_Pp1s14 MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGVVDRKGLDKGGHAKLACPVCKATAPDMK
                **************:*** *** *********:.**.* :******  ** ** *.**:*

AT5G16470.1     TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK
pp024916_Pp1s14 SMQIHHDAKHPKLPWEEDKLINLHASTSVAAE-EKPKPGVRGSLKK
                :*****::*****.:** :  *** : :..** .*****:******
BoxShade v3.31 C (beta, 970507) Output
AT5G16470.1     M T G K A K P K K H T A K E L Q A K A D A A L T N R G G G K A G L A D R T G K E K G G H A K Y E C P H C K I T V P D L K
pp024916_Pp1s14    M T G K A K P K K H T A K E I Q A K I D A A T T N R G G G K A G V V D R K G L D K G G H A K L A C P V C K A T A P D M K
 
AT5G16470.1     T M Q I H H E S K H P K L T Y E E P R - - N L H E A L A A P A E S S K P K P G I R G S L K K
pp024916_Pp1s14    S M Q I H H D A K H P K L P W E E D K L I N L H A S T S V A A E - E K P K P G V R G S L K K
 
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