fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G16470.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp008946 not found in 104aa AT3G02790.1 not_not 0.674311926 III
Pp028557 not found in 104aa AT3G02790.1 not_not 0.651376146 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G16470.1     MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK
pp028557_Pp1s21 MTGKAKPKKHTAKEIAMKIDMATTNRGGGKAGVIDRKALDKGGHAKLACPICKATAPDVK
pp008946_Pp1s90 MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGVVDRKALDKGGHAKLACPICKATAPDVK
                **************:  * * * *********: **.. :******  ** ** *.**:*

AT5G16470.1     TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK
pp028557_Pp1s21 SMSIHHEAKHPKLPWEEDKLINLH-ATASTAE-DKPKPGVRGSLKK
pp008946_Pp1s90 SMSIHHEAKHPKLPWEEDKLINLH-ATASTAE-DKPKPGVRGSLKK
                :*.****:*****.:** :  *** * *:.** .*****:******
BoxShade v3.31 C (beta, 970507) Output
AT5G16470.1     M T G K A K P K K H T A K E L Q A K A D A A L T N R G G G K A G L A D R T G K E K G G H A K Y E C P H C K I T V P D L K
pp028557_Pp1s21    M T G K A K P K K H T A K E I A M K I D M A T T N R G G G K A G V I D R K A L D K G G H A K L A C P I C K A T A P D V K
pp008946_Pp1s90    M T G K A K P K K H T A K E I A A K I D A A T T N R G G G K A G V V D R K A L D K G G H A K L A C P I C K A T A P D V K
 
AT5G16470.1     T M Q I H H E S K H P K L T Y E E P R - - N L H E A L A A P A E S S K P K P G I R G S L K K
pp028557_Pp1s21    S M S I H H E A K H P K L P W E E D K L I N L H - A T A S T A E - D K P K P G V R G S L K K
pp008946_Pp1s90    S M S I H H E A K H P K L P W E E D K L I N L H - A T A S T A E - D K P K P G V R G S L K K
 
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