fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G16470.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt015725 not found in 104aa AT3G02790.1 1st_not 0.766055045 II
Pt013060 not found in 104aa AT3G02790.1 not_not 0.761467889 III
Pt013059 not found in 114aa AT3G02790.1 not_not 0.752293577 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G16470.1     MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK
pt013059_POPTR_ MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGQADRTGQEKGGHAKYECPHCKITAPDLK
pt013060_POPTR_ MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGQADRTGQEKGGHAKYECPHCKITAPDLK
pt015725_POPTR_ MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGVADRTGQEKGGHAKYECPHCKTTAPDLK
                **************: ** *** ********* *****:************** *.****

AT5G16470.1     TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK----------
pt013059_POPTR_ TMQIHHDARHPKLPFEEDKLSNLHAVHV--ADSSKPRPGVKGSHKNNFGEGSSKSS
pt013060_POPTR_ TMQIHHDARHPKLPFEEDKLSNLHAVHV--ADSSKPRPGVKGSHKK----------
pt015725_POPTR_ SMQIHHDARHPKIPFEEDKLVNRHASSA--ADSSKSRPGVRGSLKK----------
                :*****:::***:.:** :  * *   .  *:***.:**::** *:
BoxShade v3.31 C (beta, 970507) Output
AT5G16470.1     M T G K A K P K K H T A K E L Q A K A D A A L T N R G G G K A G L A D R T G K E K G G H A K Y E C P H C K I T V P D L K
pt013059_POPTR_    M T G K A K P K K H T A K E I A A K V D A A T T N R G G G K A G Q A D R T G Q E K G G H A K Y E C P H C K I T A P D L K
pt013060_POPTR_    M T G K A K P K K H T A K E I A A K V D A A T T N R G G G K A G Q A D R T G Q E K G G H A K Y E C P H C K I T A P D L K
pt015725_POPTR_    M T G K A K P K K H T A K E L A A K L D A A T T N R G G G K A G V A D R T G Q E K G G H A K Y E C P H C K T T A P D L K
 
AT5G16470.1     T M Q I H H E S K H P K L T Y E E P R - - N L H E A L A A P A E S S K P K P G I R G S L K K - - - - - - - - - -
pt013059_POPTR_    T M Q I H H D A R H P K L P F E E D K L S N L H A V H V - - A D S S K P R P G V K G S H K N N F G E G S S K S S
pt013060_POPTR_    T M Q I H H D A R H P K L P F E E D K L S N L H A V H V - - A D S S K P R P G V K G S H K K - - - - - - - - - -
pt015725_POPTR_    S M Q I H H D A R H P K I P F E E D K L V N R H A S S A - - A D S S K S R P G V R G S L K K - - - - - - - - - -
 
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