fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G16470.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb034331 not found in 270aa AT3G02790.1 1st_not 0.683486238 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G16470.1     --------MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHC
Sb034331_Sorbi1 RGRRSRRSTRRRRSPRRSTRRRRTVAA-----ARPGRRTGWGRTRAGTRSWRARSAAPRR
                           : .*:: * :.  . *      * * ::* .   .  :. :*:  .*: 

AT5G16470.1     KITVPDLKTMQIHHESK-------------------HPKLTYEEPRNLHEALAAPAESS-
Sb034331_Sorbi1 PTSSPCRSTTRRATPSSPSSRRSSSTCTPPPQPPPPPPPPPRPPPPSPSPASAAASRSSL
                  : *  .* :    *.                    *  .   * .   * **.:.** 

AT5G16470.1     -------------KPKPGIRGSLKK-----------------------------------
Sb034331_Sorbi1 LSCLPAWGNSLRFQSHPSTRSIINQTTDLWTLVRWPLPQSACGVLLVYCCFSLLYCWYMC
                             :.:*. *. :::                                   

AT5G16470.1     --------
Sb034331_Sorbi1 YVIYVSTI
BoxShade v3.31 C (beta, 970507) Output
AT5G16470.1     - - - - - - - - M T G K A K P K K H T A K E L Q A K A D A A L T N R G G G K A G L A D R T G K E K G G H A K Y E C P H C
Sb034331_Sorbi1    R G R R S R R S T R R R R S P R R S T R R R R T V A A - - - - - A R P G R R T G W G R T R A G T R S W R A R S A A P R R
 
AT5G16470.1     K I T V P D L K T M Q I H H E S K - - - - - - - - - - - - - - - - - - - H P K L T Y E E P R N L H E A L A A P A E S S -
Sb034331_Sorbi1    P T S S P C R S T T R R A T P S S P S S R R S S S T C T P P P Q P P P P P P P P P R P P P P S P S P A S A A A S R S S L
 
AT5G16470.1     - - - - - - - - - - - - - K P K P G I R G S L K K - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Sb034331_Sorbi1    L S C L P A W G N S L R F Q S H P S T R S I I N Q T T D L W T L V R W P L P Q S A C G V L L V Y C C F S L L Y C W Y M C
 
AT5G16470.1     - - - - - - - -
Sb034331_Sorbi1    Y V I Y V S T I
 
0