fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G16470.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm050237 not found in 104aa AT3G02790.1 not_not 0.747706422 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G16470.1     MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK
gm050237_Glyma1 MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLKDRSGLEKGGHAKYECPHCKVTAPDVK
                **************: **.*** ********** **:* **************:*.**:*

AT5G16470.1     TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK
gm050237_Glyma1 SMQIHHDARHPKIPFEEDKVVNLH-ATHVP-ESSKPRPGVRGSLKK
                :*****:::***:.:** :  *** *  .* *****:**:******
BoxShade v3.31 C (beta, 970507) Output
AT5G16470.1     M T G K A K P K K H T A K E L Q A K A D A A L T N R G G G K A G L A D R T G K E K G G H A K Y E C P H C K I T V P D L K
gm050237_Glyma1    M T G K A K P K K H T A K E I A A K V D A A T T N R G G G K A G L K D R S G L E K G G H A K Y E C P H C K V T A P D V K
 
AT5G16470.1     T M Q I H H E S K H P K L T Y E E P R - - N L H E A L A A P A E S S K P K P G I R G S L K K
gm050237_Glyma1    S M Q I H H D A R H P K I P F E E D K V V N L H - A T H V P - E S S K P R P G V R G S L K K
 
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