fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G17810.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt013160 not found in 226aa AT3G03660.1 not_not 0.403083700 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G17810.1     -MNQEGASHSPSST----STEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKML
pt013160_POPTR_ MEDNQGQDHNSQSNHGTERSEPVRSRWTPKPEQILILESIFNSGMVNPPKNETVRIRKLL
                  :::* .*...*.     :****:**:**************** *****:*******:*

AT5G17810.1     EKFGAVGDANVFYWFQNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMSMHQYPCSN
pt013160_POPTR_ EKFGSVGDANVFYWFQNRRSRSRRRQRQMQA-----------------------------
                ****:********************:**: *                             

AT5G17810.1     NEIDLGFGSCSNLSANYFLNGSSSSQIPSFFLGLSSSSGGCENNNGMENLFKMYGHESDH
pt013160_POPTR_ ----------SGGTSNGFANSPS-----SYLVGASSSCGVVGEDHGVESLFSF---SNQM
                          *. ::* * *..*     *:::* ***.*   :::*:*.**.:   ..: 

AT5G17810.1     NHQQQHHSSNAASVLNPSDQNSNSQYEQEGFMTVFINGVPMEVTKGAIDMKTMFGDDSVL
pt013160_POPTR_ GFQEFEQTSGVTSIVCPS-ETSSLHYQTAGFITIFINGVPTEVPRVPLDVKAMFGQDVML
                ..*: .::*..:*:: ** :.*. :*:  **:*:****** **.: .:*:*:***:* :*

AT5G17810.1     LHSSGLPLPTDEFGFLMHSLQHGQTYFLVPRQT-
pt013160_POPTR_ VHSSGVPVPTNEFGFLVQILHHGESYFLVNISAV
                :****:*:**:*****:: *:**::****  .:
BoxShade v3.31 C (beta, 970507) Output
AT5G17810.1     - M N Q E G A S H S P S S T - - - - S T E P V R A R W S P K P E Q I L I L E S I F N S G T V N P P K D E T V R I R K M L
pt013160_POPTR_    M E D N Q G Q D H N S Q S N H G T E R S E P V R S R W T P K P E Q I L I L E S I F N S G M V N P P K N E T V R I R K L L
 
AT5G17810.1     E K F G A V G D A N V F Y W F Q N R R S R S R R R H R Q L L A A T T A A A T S I G A E D H Q H M T A M S M H Q Y P C S N
pt013160_POPTR_    E K F G S V G D A N V F Y W F Q N R R S R S R R R Q R Q M Q A - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT5G17810.1     N E I D L G F G S C S N L S A N Y F L N G S S S S Q I P S F F L G L S S S S G G C E N N N G M E N L F K M Y G H E S D H
pt013160_POPTR_    - - - - - - - - - - S G G T S N G F A N S P S - - - - - S Y L V G A S S S C G V V G E D H G V E S L F S F - - - S N Q M
 
AT5G17810.1     N H Q Q Q H H S S N A A S V L N P S D Q N S N S Q Y E Q E G F M T V F I N G V P M E V T K G A I D M K T M F G D D S V L
pt013160_POPTR_    G F Q E F E Q T S G V T S I V C P S - E T S S L H Y Q T A G F I T I F I N G V P T E V P R V P L D V K A M F G Q D V M L
 
AT5G17810.1     L H S S G L P L P T D E F G F L M H S L Q H G Q T Y F L V P R Q T -
pt013160_POPTR_    V H S S G V P V P T N E F G F L V Q I L H H G E S Y F L V N I S A V
 
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