fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G21960.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt007885 not found in 206aa AT1G19210.1 1st_not 0.414438502 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G21960.1     ------------------MDASPKYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKA
pt007885_POPTR_ MVRPGTSSSSVSSEQQSDRTHEPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKA
                                     .***.***********:********:******:*:.***

AT5G21960.1     ARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQVVASRFACEEELLPPEQHHPS
pt007885_POPTR_ ARAFDAALYCLRGSGAKFNFPDNPPDIVGGRSLTPQEVQEVAARFANEE---------PT
                *************.**:********:* ********::* **:*** **         *:

AT5G21960.1     PPR---GDHNTEEEVIISARGEINSGSGGPTLGQVGED----------NNNEGNSNDTSS
pt007885_POPTR_ SSTAMGGESSSHVENYTSSSSDCGA-------GQMDSDTIDWSFLNLLDSNEGAS-DFGL
                ..    *: .:. *   *: .: .:       **:..*          :.*** * * . 

AT5G21960.1     YWPLIWEEENFVGPPNSDHEFGFFTDDSTNLYFPTQQQQQHQLSSDFYYDGACEDDFSHY
pt007885_POPTR_ YHGLDHMGGDYYPPPTPPPPPDYNGDDNNG-----------------------DETFSHQ
                *  *     ::  **..    .:  **...                       :: *** 

AT5G21960.1     NINLWNF
pt007885_POPTR_ SF-LWNF
                .: ****
BoxShade v3.31 C (beta, 970507) Output
AT5G21960.1     - - - - - - - - - - - - - - - - - - M D A S P K Y T G V R K R K W G K W V A E I R L P N S R D R I W L G S F D S A E K A
pt007885_POPTR_    M V R P G T S S S S V S S E Q Q S D R T H E P K Y K G V R K R K W G K W V S E I R L P N S R E R I W L G S Y D T P E K A
 
AT5G21960.1     A R A F D A A L Y C L R G P G A R F N F P D N P P E I P G G R S L T P Q Q I Q V V A S R F A C E E E L L P P E Q H H P S
pt007885_POPTR_    A R A F D A A L Y C L R G S G A K F N F P D N P P D I V G G R S L T P Q E V Q E V A A R F A N E E - - - - - - - - - P T
 
AT5G21960.1     P P R - - - G D H N T E E E V I I S A R G E I N S G S G G P T L G Q V G E D - - - - - - - - - - N N N E G N S N D T S S
pt007885_POPTR_    S S T A M G G E S S S H V E N Y T S S S S D C G A - - - - - - - G Q M D S D T I D W S F L N L L D S N E G A S - D F G L
 
AT5G21960.1     Y W P L I W E E E N F V G P P N S D H E F G F F T D D S T N L Y F P T Q Q Q Q Q H Q L S S D F Y Y D G A C E D D F S H Y
pt007885_POPTR_    Y H G L D H M G G D Y Y P P P T P P P P P D Y N G D D N N G - - - - - - - - - - - - - - - - - - - - - - - D E T F S H Q
 
AT5G21960.1     N I N L W N F
pt007885_POPTR_    S F - L W N F
 
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