Input
| Putative repression domain
|
|
AT5G21960.1 |
not found |
|
Ortholog
| Putative repression domain
| Reverse top hit
| Relation
| Blast score ratio
| Type
|
Pt007885 |
not found in 206aa |
AT1G19210.1 |
1st_not |
0.414438502 |
II |
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.
CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)
AT5G21960.1 ------------------MDASPKYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKA
pt007885_POPTR_ MVRPGTSSSSVSSEQQSDRTHEPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKA
.***.***********:********:******:*:.***
AT5G21960.1 ARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQVVASRFACEEELLPPEQHHPS
pt007885_POPTR_ ARAFDAALYCLRGSGAKFNFPDNPPDIVGGRSLTPQEVQEVAARFANEE---------PT
*************.**:********:* ********::* **:*** ** *:
AT5G21960.1 PPR---GDHNTEEEVIISARGEINSGSGGPTLGQVGED----------NNNEGNSNDTSS
pt007885_POPTR_ SSTAMGGESSSHVENYTSSSSDCGA-------GQMDSDTIDWSFLNLLDSNEGAS-DFGL
.. *: .:. * *: .: .: **:..* :.*** * * .
AT5G21960.1 YWPLIWEEENFVGPPNSDHEFGFFTDDSTNLYFPTQQQQQHQLSSDFYYDGACEDDFSHY
pt007885_POPTR_ YHGLDHMGGDYYPPPTPPPPPDYNGDDNNG-----------------------DETFSHQ
* * :: **.. .: **... :: ***
AT5G21960.1 NINLWNF
pt007885_POPTR_ SF-LWNF
.: ****
BoxShade v3.31 C (beta, 970507) Output
AT5G21960.1 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
M |
D |
A |
S |
P |
K |
Y |
T |
G |
V |
R |
K |
R |
K |
W |
G |
K |
W |
V |
A |
E |
I |
R |
L |
P |
N |
S |
R |
D |
R |
I |
W |
L |
G |
S |
F |
D |
S |
A |
E |
K |
A |
pt007885_POPTR_ |
M |
V |
R |
P |
G |
T |
S |
S |
S |
S |
V |
S |
S |
E |
Q |
Q |
S |
D |
R |
T |
H |
E |
P |
K |
Y |
K |
G |
V |
R |
K |
R |
K |
W |
G |
K |
W |
V |
S |
E |
I |
R |
L |
P |
N |
S |
R |
E |
R |
I |
W |
L |
G |
S |
Y |
D |
T |
P |
E |
K |
A |
|
AT5G21960.1 |
A |
R |
A |
F |
D |
A |
A |
L |
Y |
C |
L |
R |
G |
P |
G |
A |
R |
F |
N |
F |
P |
D |
N |
P |
P |
E |
I |
P |
G |
G |
R |
S |
L |
T |
P |
Q |
Q |
I |
Q |
V |
V |
A |
S |
R |
F |
A |
C |
E |
E |
E |
L |
L |
P |
P |
E |
Q |
H |
H |
P |
S |
pt007885_POPTR_ |
A |
R |
A |
F |
D |
A |
A |
L |
Y |
C |
L |
R |
G |
S |
G |
A |
K |
F |
N |
F |
P |
D |
N |
P |
P |
D |
I |
V |
G |
G |
R |
S |
L |
T |
P |
Q |
E |
V |
Q |
E |
V |
A |
A |
R |
F |
A |
N |
E |
E |
- |
- |
- |
- |
- |
- |
- |
- |
- |
P |
T |
|
AT5G21960.1 |
P |
P |
R |
- |
- |
- |
G |
D |
H |
N |
T |
E |
E |
E |
V |
I |
I |
S |
A |
R |
G |
E |
I |
N |
S |
G |
S |
G |
G |
P |
T |
L |
G |
Q |
V |
G |
E |
D |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
N |
N |
N |
E |
G |
N |
S |
N |
D |
T |
S |
S |
pt007885_POPTR_ |
S |
S |
T |
A |
M |
G |
G |
E |
S |
S |
S |
H |
V |
E |
N |
Y |
T |
S |
S |
S |
S |
D |
C |
G |
A |
- |
- |
- |
- |
- |
- |
- |
G |
Q |
M |
D |
S |
D |
T |
I |
D |
W |
S |
F |
L |
N |
L |
L |
D |
S |
N |
E |
G |
A |
S |
- |
D |
F |
G |
L |
|
AT5G21960.1 |
Y |
W |
P |
L |
I |
W |
E |
E |
E |
N |
F |
V |
G |
P |
P |
N |
S |
D |
H |
E |
F |
G |
F |
F |
T |
D |
D |
S |
T |
N |
L |
Y |
F |
P |
T |
Q |
Q |
Q |
Q |
Q |
H |
Q |
L |
S |
S |
D |
F |
Y |
Y |
D |
G |
A |
C |
E |
D |
D |
F |
S |
H |
Y |
pt007885_POPTR_ |
Y |
H |
G |
L |
D |
H |
M |
G |
G |
D |
Y |
Y |
P |
P |
P |
T |
P |
P |
P |
P |
P |
D |
Y |
N |
G |
D |
D |
N |
N |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
D |
E |
T |
F |
S |
H |
Q |
|
AT5G21960.1 |
N |
I |
N |
L |
W |
N |
F |
pt007885_POPTR_ |
S |
F |
- |
L |
W |
N |
F |
|
|