fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G23000.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm033972 not found in 340aa AT5G57620.1 1st_not 0.405745062 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G23000.1     MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN
gm033972_Glyma1 MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLN
                *********::**************:*****:*.*****::* ****:************

AT5G23000.1     YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS
gm033972_Glyma1 YLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGL
                *********:**:****** **:* **********:*****************::**:. 

AT5G23000.1     SSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSYNPYAENPNQY-----PTKSL-----
gm033972_Glyma1 L--PSSHQRIAPYQQFSSQNPSSFPSHSSLSSSQYRDYYYNSSHHYYIPAPTSSFTCLEP
                   .**    :** :  **: .  .* :::.**.*. *  *..::     **.*:     

AT5G23000.1     -------------ISSINGFEAGDKQIISYINPN--YP---QDLYLSDSNNNTSNANGFL
gm033972_Glyma1 ISAPSSNYTNTTTTSNSLSFYQHQEPLVS-VSPRQYYPITDSSMLVFGSETSCSSSDG--
                              *.  .*   :: ::* :.*.  **   ..: : .*:.. *.::*  

AT5G23000.1     LNHNMCDQYKNHTSFSSDVNGIRSEIMMKQEEIMMMMMIDH--------HIDQRTKGYNG
gm033972_Glyma1 ----SCSQVSLGREIKQEDMGFQNFMFGDHQNMNKFMNINHDGGEEYVNQWTQRPNGYIF
                     *.* .   .:..:  *::. :: .::::  :* *:*        :  **.:**  

AT5G23000.1     EFTQGYYNYYNGHGDLKQMISGTGTNSNINMGGSGSSSSSISNLAENKSSGSLLLEYKCL
gm033972_Glyma1 QTQQTALDY-----DLEVIKNLICSNS------SSNSNNGYLSVDENKT------EEKGV
                :  *   :*     **: : .   :**      *..*...  .: ***:      * * :

AT5G23000.1     PYFYS-
gm033972_Glyma1 YYNYCN
                 * *.
BoxShade v3.31 C (beta, 970507) Output
AT5G23000.1     M G R A P C C D K T K V K R G P W S P E E D S K L R D Y I E K Y G N G G N W I S F P L K A G L R R C G K S C R L R W L N
gm033972_Glyma1    M G R A P C C D K A N V K R G P W S P E E D S K L K D Y I E K H G T G G N W I A L P Q K A G L K R C G K S C R L R W L N
 
AT5G23000.1     Y L R P N I K H G D F S E E E D R I I F S L F A A I G S R W S I I A A H L P G R T D N D I K N Y W N T K L R K K L L S S
gm033972_Glyma1    Y L R P N I K H G E F S D E E D R I I C S L Y A N I G S R W S I I A A Q L P G R T D N D I K N Y W N T K L K R K L M G L
 
AT5G23000.1     S S D S S S S A M A S P Y L N P I S Q D V K R P T S P T T I P S S S Y N P Y A E N P N Q Y - - - - - P T K S L - - - - -
gm033972_Glyma1    L - - P S S H Q R I A P Y Q Q F S S Q N P S S F P S H S S L S S S Q Y R D Y Y Y N S S H H Y Y I P A P T S S F T C L E P
 
AT5G23000.1     - - - - - - - - - - - - - I S S I N G F E A G D K Q I I S Y I N P N - - Y P - - - Q D L Y L S D S N N N T S N A N G F L
gm033972_Glyma1    I S A P S S N Y T N T T T T S N S L S F Y Q H Q E P L V S - V S P R Q Y Y P I T D S S M L V F G S E T S C S S S D G - -
 
AT5G23000.1     L N H N M C D Q Y K N H T S F S S D V N G I R S E I M M K Q E E I M M M M M I D H - - - - - - - - H I D Q R T K G Y N G
gm033972_Glyma1    - - - - S C S Q V S L G R E I K Q E D M G F Q N F M F G D H Q N M N K F M N I N H D G G E E Y V N Q W T Q R P N G Y I F
 
AT5G23000.1     E F T Q G Y Y N Y Y N G H G D L K Q M I S G T G T N S N I N M G G S G S S S S S I S N L A E N K S S G S L L L E Y K C L
gm033972_Glyma1    Q T Q Q T A L D Y - - - - - D L E V I K N L I C S N S - - - - - - S S N S N N G Y L S V D E N K T - - - - - - E E K G V
 
AT5G23000.1     P Y F Y S -
gm033972_Glyma1    Y Y N Y C N
 
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