fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G23090.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm046870 not found in 160aa AT5G23090.1 1st_1st 0.780219780 Ia
Pt027186 not found in 156aa AT5G23090.1 1st_1st 0.798534798 Ia
Sm016115 not found in 208aa AT5G23090.1 1st_1st 0.663003663 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G23090.1     -MDP------MDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL
Sm016115_Selmo1 GVLPLLFSMTMDAASRSKEDVSLPKATMTKIIKEMLPPEVRVARDAQDLLVDCCVEFINL
gm046870_Glyma1 -MEP------MDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL
pt027186_POPTR_ -MEP------MDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL
                 : *      ** ..:****.*****************:***********::********

AT5G23090.1     VSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQR----S
Sm016115_Selmo1 ISSESNEICNKEEKRTIAPEHVLKALEILGFGEYIEEVHAAYEQHRNETL-DSPK---AG
gm046870_Glyma1 VSSESNEVCNREDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKLETMQDSLRGGGGG
pt027186_POPTR_ VSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMHDSLK----G
                :*****::*.:*:*************::**********:******: **: *: :    .

AT5G23090.1     VKWNP--GAQMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRSPQS
Sm016115_Selmo1 GKWGKEAGSGMTEEEAIAAQQRMFAEARARMNSGGTQSS-------------
gm046870_Glyma1 GKWNN--GAEMTEEEALAEQQRMFAEARARMNGGAIASK--QPDADQ-SLDS
pt027186_POPTR_ GKWSN--GAAMTEEEAAAAQQRMFDEARARMNGGVTAPK--QPETNQ-SLKS
                 **.   *: ****** * ***** *******.*   ..
BoxShade v3.31 C (beta, 970507) Output
AT5G23090.1     - M D P - - - - - - M D I V G K S K E D A S L P K A T M T K I I K E M L P P D V R V A R D A Q D L L I E C C V E F I N L
Sm016115_Selmo1    G V L P L L F S M T M D A A S R S K E D V S L P K A T M T K I I K E M L P P E V R V A R D A Q D L L V D C C V E F I N L
gm046870_Glyma1    - M E P - - - - - - M D I V G K S K E D A S L P K A T M T K I I K E M L P P D V R V A R D A Q D L L I E C C V E F I N L
pt027186_POPTR_    - M E P - - - - - - M D I V G K S K E D A S L P K A T M T K I I K E M L P P D V R V A R D A Q D L L I E C C V E F I N L
 
AT5G23090.1     V S S E S N D V C N K E D K R T I A P E H V L K A L Q V L G F G E Y I E E V Y A A Y E Q H K Y E T M Q D T Q R - - - - S
Sm016115_Selmo1    I S S E S N E I C N K E E K R T I A P E H V L K A L E I L G F G E Y I E E V H A A Y E Q H R N E T L - D S P K - - - A G
gm046870_Glyma1    V S S E S N E V C N R E D K R T I A P E H V L K A L Q V L G F G E Y I E E V Y A A Y E Q H K L E T M Q D S L R G G G G G
pt027186_POPTR_    V S S E S N E V C S R E D K R T I A P E H V L K A L E V L G F G E Y I E E V Y A A Y E Q H K L E T M H D S L K - - - - G
 
AT5G23090.1     V K W N P - - G A Q M T E E E A A A E Q Q R M F A E A R A R M N G G V S V P Q P E H P E T D Q R S P Q S
Sm016115_Selmo1    G K W G K E A G S G M T E E E A I A A Q Q R M F A E A R A R M N S G G T Q S S - - - - - - - - - - - - -
gm046870_Glyma1    G K W N N - - G A E M T E E E A L A E Q Q R M F A E A R A R M N G G A I A S K - - Q P D A D Q - S L D S
pt027186_POPTR_    G K W S N - - G A A M T E E E A A A A Q Q R M F D E A R A R M N G G V T A P K - - Q P E T N Q - S L K S
 
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