fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G23280.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt000871 not found in 272aa AT5G23280.1 1st_1st 0.575301204 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G23280.1     MSINNNNNNNNNNNDGLMISSNGALIE---QQP------------SVVVKKPPAKDRHSK
pt000871_POPTR_ MSDNSGAVN------------NGALIDPQRNQPPGGGGGGGATNGALAVKKPPSKDRHSK
                ** *..  *            *****:   :**            ::.*****:******

AT5G23280.1     VDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFST
pt000871_POPTR_ VDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFST
                ************************************************************

AT5G23280.1     ASVSIRGATNS--------------TSLDHKPTSLLGGTSPFILGKRVRADEDSNNSHNH
pt000871_POPTR_ VSVSVRAGGNSNSISSLSSNNVHSAASLDHKP---LLGPAPFILGKRMRPEEDGNGGKDD
                .***:*.. **              :******   * *.:*******:*.:**.*..::.

AT5G23280.1     SSV----------GKDETFTTTPAGFWAVPARPDFGQVWSFAGAPQEMFLQQQHHHQQPL
pt000871_POPTR_ GGVPVGPTIGSLMGPTATAAAGSGGFWALPARADF---WGFAAAPPEMVVQPTAVQQSSL
                ..*          *   * :: ..****:***.**   *.**.** **.:*    :*..*

AT5G23280.1     FVHQQQ-QQQAAMGEASAARVGNYLPGHLNLLASLSGGSPGSDRREEDPR
pt000871_POPTR_ FMHQQHAAAAAAMGEASAARLGNYLPGHLNLLASLSGGSGSSGRREEDQR
                *:***:    **********:****************** .*.***** *
BoxShade v3.31 C (beta, 970507) Output
AT5G23280.1     M S I N N N N N N N N N N N D G L M I S S N G A L I E - - - Q Q P - - - - - - - - - - - - S V V V K K P P A K D R H S K
pt000871_POPTR_    M S D N S G A V N - - - - - - - - - - - - N G A L I D P Q R N Q P P G G G G G G G A T N G A L A V K K P P S K D R H S K
 
AT5G23280.1     V D G R G R R I R M P I I C A A R V F Q L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G T G T T P A S F S T
pt000871_POPTR_    V D G R G R R I R M P I I C A A R V F Q L T R E L G H K S D G Q T I E W L L R Q A E P S I I A A T G T G T T P A S F S T
 
AT5G23280.1     A S V S I R G A T N S - - - - - - - - - - - - - - T S L D H K P T S L L G G T S P F I L G K R V R A D E D S N N S H N H
pt000871_POPTR_    V S V S V R A G G N S N S I S S L S S N N V H S A A S L D H K P - - - L L G P A P F I L G K R M R P E E D G N G G K D D
 
AT5G23280.1     S S V - - - - - - - - - - G K D E T F T T T P A G F W A V P A R P D F G Q V W S F A G A P Q E M F L Q Q Q H H H Q Q P L
pt000871_POPTR_    G G V P V G P T I G S L M G P T A T A A A G S G G F W A L P A R A D F - - - W G F A A A P P E M V V Q P T A V Q Q S S L
 
AT5G23280.1     F V H Q Q Q - Q Q Q A A M G E A S A A R V G N Y L P G H L N L L A S L S G G S P G S D R R E E D P R
pt000871_POPTR_    F M H Q Q H A A A A A A M G E A S A A R L G N Y L P G H L N L L A S L S G G S G S S G R R E E D Q R
 
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